View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_3 (Length: 482)
Name: NF10764_3
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_3 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 21837201 - 21836975
Alignment:
| Q |
22 |
catcatctatacgtattaaacaaaatagtagtgtctaggatgtaatagtagacactatttcgatataaatattctgagtttcttcttttctt--gtgttc |
119 |
Q |
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| T |
21837201 |
catcatatatacgtattaaacaaa-tagtagtgtctagaatgtaatagtagacactatttcgatataaatattctgagtttcttcttttcttttgtgttc |
21837103 |
T |
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| Q |
120 |
aaattgaccgtggatttgttatgcaatgtatatattgcatttcgatatatattccattgggcatgaaatgaattcagcgactatggcttgaccaatttat |
219 |
Q |
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| T |
21837102 |
aaattgaccatggatttgttatgcaatgtatatattgcatttcgatatatattccattgggcatgaaatgaattcagcgactatggcttgaccaatttat |
21837003 |
T |
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| Q |
220 |
tagacagtttcatcagtccctttttaat |
247 |
Q |
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| T |
21837002 |
tagacagtttcatcagttcctttttaat |
21836975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 21836300 - 21836109
Alignment:
| Q |
268 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtgagtgtcacattggtttagtgttctacacgagt |
367 |
Q |
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| T |
21836300 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtga--gtcacattggtttagtgttctacatgagt |
21836203 |
T |
|
| Q |
368 |
c--------caaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaactaactattttcacaagttgaatctgcctaaatac |
453 |
Q |
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| T |
21836202 |
cagtacgaataaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaattaactattttcacaagttgaatctgtctaaatac |
21836109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 15264956 - 15265002
Alignment:
| Q |
170 |
attccattgggcatgaaatgaattcagcgactatggcttgaccaatt |
216 |
Q |
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| T |
15264956 |
attccattgggtatgaaatgaattcagtgactatgacttgaccaatt |
15265002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 8537549 - 8537593
Alignment:
| Q |
386 |
ttgaaatgattttgcaatgaccgagtcttttaactaactattttc |
430 |
Q |
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| T |
8537549 |
ttgaaacgatcttgcaatgaccaagtcttttaattaactattttc |
8537593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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