View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_5 (Length: 468)
Name: NF10764_5
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_5 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 270 - 439
Target Start/End: Original strand, 28634 - 28803
Alignment:
| Q |
270 |
tcttctcttctaacagaagcaactctgtagggaggagagcctgccgatcgagcgaaaggatccatacggctttcagggggagctgcttttacagcctact |
369 |
Q |
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| T |
28634 |
tcttctcttcgaacagaagcaactctgtagggaggagagcctgccgatcgagcgaagggatccatacggctttcagggggagctgcttttacagcctact |
28733 |
T |
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| Q |
370 |
ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgc |
439 |
Q |
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| T |
28734 |
ggtatttaagtaacggacgtgtttaattaattttcatgatgattcattcaattcgttcgccgggaagtgc |
28803 |
T |
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Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 6101423 - 6101620
Alignment:
| Q |
74 |
ttccccaaccaattcggtcgataaaatgagaggtatatcttccttatgtcgtttcatttgtttgacaatt-acttatgtcataactgtcatcgaggtatt |
172 |
Q |
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| T |
6101423 |
ttccctaaccaattcggtcgataaagtgagagttatatcttccttatgtcatttcatttgtttgacaattcacttatgtcataactgtcattgaggtatt |
6101522 |
T |
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| Q |
173 |
cagaccatccgcggtctctctcaattcttgtagttcttctagccaatcatgaacttttggtttgcgcttttttcgcagcaactgttttataatataat |
270 |
Q |
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| T |
6101523 |
cagaccatatgtggtttctctcaattcttgtagttcttctagctaatcataaacttttggtttgcgcttttttccctgcagttgttttataatataat |
6101620 |
T |
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