View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10764_7 (Length: 436)
Name: NF10764_7
Description: NF10764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10764_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 26158519 - 26158107
Alignment:
| Q |
20 |
caaacaggacaatgacacaccgtcaccggtagcaattgnnnnnnntaacataactgatcacactgtgtctcacaccaaatacgtctgtaatcaaaagtat |
119 |
Q |
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| T |
26158519 |
caaacacgacaatgacacatcgtcaacggtagcaattgaaaaaa-taacataactgatcacactgtgtctgacaccaaacacgtctttaatcaaaagtat |
26158421 |
T |
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| Q |
120 |
cggtgctaaagtgagaattgaactctgatacttggtgtgtcgtgggaaaactctgatgcttttgtaggttatagtagaattgaaaattgaagcatggttt |
219 |
Q |
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| T |
26158420 |
cggtgctaaggtgagaattgaactctgatgctgggtgtgtcgtgggaaaactctgatgcttttgtaggttatagtagaattgaaaattgaagcatggttt |
26158321 |
T |
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| Q |
220 |
ctatttagtaatactggctgactttggaataccagcttcattcattggtaatgctactaaccaaagtggaattgtatatgggctatggatatggataatt |
319 |
Q |
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| T |
26158320 |
ctatttagtaatactggctgactttggaatacc---ttcattcattggtaatgctactaaccaaggtggaattgtatatgggctatggatatggataatt |
26158224 |
T |
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| Q |
320 |
aagggtagtcttagctataagtttggcattgtgattttagggtatgaaaaataaatagagttagaccagcttcatcatatgctttaccaagctcggccat |
419 |
Q |
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| T |
26158223 |
aagggtagtcttagctataagtttggcattgtgattttaggctatgaaaaataaatacagttagaccagcttcatcatatgctttaccaagctgggccat |
26158124 |
T |
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| Q |
420 |
tttacttgagtggaacc |
436 |
Q |
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| T |
26158123 |
tttacttgagtggaacc |
26158107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 26187346 - 26187247
Alignment:
| Q |
154 |
gtgtgtcgtgggaaaactctga-tgcttttgtaggttatagtagaattgaaaattgaagcatggtttctatttagtaatactggctgactttggaatacc |
252 |
Q |
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| T |
26187346 |
gtgtgttgtgggaaaactctgaatgctttcgtaggttataatagaattgaaaattgaagcatggtttctatttagtaatacaggctcactttggaatacc |
26187247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 26122267 - 26122185
Alignment:
| Q |
167 |
aaactctgatgcttttgtaggttatagtagaattgaaaattgaagcatggtttctatttagtaatactggctgactttggaata |
250 |
Q |
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| T |
26122267 |
aaactctgatgcttttgtagcttata-tagaagtgaaaattctagcatggtttctttttagtattactggatcactttggaata |
26122185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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