View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_high_6 (Length: 250)
Name: NF10765_high_6
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6496583 - 6496348
Alignment:
| Q |
1 |
ttacatttgtttgatatttgattacattacattaacaacttttatttttgttaccagtgacacaagaatcctcatatttcagacacgattgtactaaata |
100 |
Q |
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| T |
6496583 |
ttacatttgtttgatatttgattacattacattagcaactcttatttttgttaccagtgacacaagaatcctcatatttcagacactattgtactaaata |
6496484 |
T |
|
| Q |
101 |
agataagataagatgaacacaaagattatatatgaacacactcactgaatgaagcacacaaaatacatatggatatcttcactcacttcaacgactcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496483 |
agataagataagatgaacacaaagattatatatgaacacactcactgaatgaagcacacaaaatacatatggatatcttcactcacttcaacgactcatg |
6496384 |
T |
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| Q |
201 |
ccctgttcaactgctggagctgttgtagttgtagcc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6496383 |
ccctgttcaactgctggagctgttgtagttgtagcc |
6496348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 44212013 - 44211962
Alignment:
| Q |
175 |
atcttcactcacttcaacgactcatgccctgttcaactgctggagctgttgt |
226 |
Q |
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||||||||||||||||||| |||||||| |||||||||| |||||||||||| |
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| T |
44212013 |
atcttcactcacttcaacggctcatgccatgttcaactgttggagctgttgt |
44211962 |
T |
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