View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10765_high_7 (Length: 250)

Name: NF10765_high_7
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10765_high_7
NF10765_high_7
[»] chr8 (2 HSPs)
chr8 (5-245)||(11402055-11402295)
chr8 (38-133)||(11403127-11403222)
[»] chr2 (4 HSPs)
chr2 (17-138)||(42300562-42300683)
chr2 (17-138)||(42913325-42913446)
chr2 (171-245)||(42913497-42913571)
chr2 (171-245)||(42300437-42300511)
[»] chr4 (5 HSPs)
chr4 (17-138)||(27730425-27730546)
chr4 (17-138)||(45965976-45966097)
chr4 (171-245)||(27730597-27730671)
chr4 (171-245)||(45965851-45965925)
chr4 (171-237)||(24146599-24146665)
[»] chr6 (2 HSPs)
chr6 (171-245)||(29303584-29303658)
chr6 (17-138)||(29303709-29303830)
[»] chr5 (4 HSPs)
chr5 (171-245)||(12529384-12529458)
chr5 (171-245)||(35841564-35841638)
chr5 (17-138)||(12529212-12529333)
chr5 (17-138)||(35841689-35841810)
[»] chr1 (3 HSPs)
chr1 (171-245)||(29282638-29282712)
chr1 (171-245)||(49220633-49220707)
chr1 (17-138)||(29282466-29282587)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 11402295 - 11402055
Alignment:
Q  5 gatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccacc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402295 gatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccacc 11402196  T
Q  105 ttgttatccataatattttctccatacacgctcaaattttgtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402195 ttgttatccataatattttctccatacacgctcaaattttgtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctac 11402096  T
Q  205 acagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11402095 acagagattgcagtttttatttcggagttttctctactcct 11402055  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
Q  38 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 133  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 42300683 - 42300562
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | |||||| ||||||||||||||||| ||||   |    
T  42300683 caaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttga 42300584  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  42300583 atatcttctccatacactctca 42300562  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 42913325 - 42913446
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  42913325 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 42913424  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  42913425 atatcttctccatacactctca 42913446  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 42913497 - 42913571
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| ||||||| |||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcct 42913571  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 42300511 - 42300437
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || ||||||| |||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcct 42300437  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  27730525 atatcttctccatacactctca 27730546  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 45966097 - 45965976
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    ||||||||| ||||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  45966097 caaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 45965998  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  45965997 atatcttctccatacactctca 45965976  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 27730597 - 27730671
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 27730671  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 45965925 - 45965851
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 45965851  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct 237  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||    
T  24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct 24146599  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 29303658 - 29303584
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29303584  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 29303830 - 29303709
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29303830 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29303731  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  29303730 atatcttctccatacactctca 29303709  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 12529384 - 12529458
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 12529458  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 35841638 - 35841564
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 35841564  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  12529312 atatcttctccatacactctca 12529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  35841810 caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 35841711  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  35841710 atatcttctccatacactctca 35841689  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 29282638 - 29282712
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29282712  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 49220633 - 49220707
Alignment:
Q  171 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 245  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 49220707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 29282466 - 29282587
Alignment:
Q  17 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 116  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29282466 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29282565  T
Q  117 atattttctccatacacgctca 138  Q
    |||| |||||||||||| ||||    
T  29282566 atatcttctccatacactctca 29282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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