View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10765_low_1 (Length: 531)
Name: NF10765_low_1
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 2 - 383
Target Start/End: Complemental strand, 14757960 - 14757579
Alignment:
| Q |
2 |
cctcctaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaatcctacaaagtgcttctttctgattaagaatctcattcttc |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
14757960 |
cctcccaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaattctacaaagtgcttctttctgtttaagaatctcattctgc |
14757861 |
T |
|
| Q |
102 |
attgtctttgttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcataatcggatcattattacggaatgtgtgatccttattgaggt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
14757860 |
attgtctttgttgtaatagaatccaaggtattaagccatgaagtacaaatacgattcataatcggatcgttattacagaatgtgtgatccttattgaggt |
14757761 |
T |
|
| Q |
202 |
gaaatagcccaaacagaccaataatattcaagcaaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14757760 |
gaaatagcccaaacagaccaataatattcaagcaaatcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctc |
14757661 |
T |
|
| Q |
302 |
ttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14757660 |
ttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
14757579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 14757520 - 14757382
Alignment:
| Q |
382 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
|
| Q |
482 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14757420 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
14757382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 2 - 383
Target Start/End: Complemental strand, 3614137 - 3613756
Alignment:
| Q |
2 |
cctcctaagcacctgtgcaagccagtatgtttgtgctagtccaaatggatgtgcagcaatcctacaaagtgcttctttctgattaagaatctcattcttc |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
3614137 |
cctcccaagcacctgtgcaagccagtatgtttgtgctaatccaaatggatgtgcaacaatcctacaaagtgcttctttttgattaagaatctcattatgc |
3614038 |
T |
|
| Q |
102 |
attgtctttgttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcataatcggatcattattacggaatgtgtgatccttattgaggt |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
3614037 |
attctctttgttgtaatagaatccaaggtattaagccatgaagtacaaatacggttcatattcagatcattataacagaatgtgcgatccttattgaggt |
3613938 |
T |
|
| Q |
202 |
gaaatagcccaaacagaccaataatattcaagcaaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctc |
301 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3613937 |
gaagtagcccaaacagaccgataacattcaagcaaatcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctc |
3613838 |
T |
|
| Q |
302 |
ttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
383 |
Q |
| |
|
||| || ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3613837 |
ttgatttgcaaaagaatccgtccaacaatactctttcaaggttcttgaagttggatgaggcataataccagaacctacccca |
3613756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 3613697 - 3613559
Alignment:
| Q |
382 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
|
| Q |
482 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
520 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3613597 |
agcattcaaaatgcccatatcacgtacatcaaagttcat |
3613559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University