View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_10 (Length: 303)
Name: NF10765_low_10
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 6132187 - 6132470
Alignment:
| Q |
1 |
ttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagattgaagattattggatagttat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6132187 |
ttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagatcgaagattattggatagttat |
6132286 |
T |
|
| Q |
101 |
gaatgaagagtgtctcaaattagactgcatcccaagcccagtgctcgaaagtattgttaatgtggcgcgagtagctgagttcacatacgaaaactttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6132287 |
gaatgaagagtgtctcaaattagactgcatcccaagcccagtggtcgaaagtattgttaatgtggcgcgagtagccgagttcacatacgaaaactttgag |
6132386 |
T |
|
| Q |
201 |
gataaatacacaaatggggaattgctgaaagactacattgttaaactgattctaaaacctataagcatttagaaatgtgaatag |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6132387 |
gataaatacacaaatggggaattgctgaaagactacattgttaaactgattctaaaacctataagcatttagaaatgtgaatag |
6132470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6135843 - 6136045
Alignment:
| Q |
1 |
ttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagattgaagattattggatagttat |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||| | || ||||| | ||||||| ||||||||||||| ||| |||||||| |||| |
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| T |
6135843 |
ttgcttctacagttgaatgttgcatgaagcaatatgacatgtgaatag-----gcttatagactcattttgaaagagattgacgataattggataattat |
6135937 |
T |
|
| Q |
101 |
gaatgaagagtgtctcaaattagactgcatcccaagcccagtg-------ctcgaaagtattgttaatgtggcgcgagtagctgagttcacatacgaaaa |
193 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||||| |||||| || ||||||||| ||||||||| |||||| ||||||||||||| |||| |
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| T |
6135938 |
gaatgaagagtgcctcaagttagattgcataccaagaccagtgcttgaaacttgaaagtattactaatgtggcacgagtaactgagttcacatataaaaa |
6136037 |
T |
|
| Q |
194 |
ctttgagg |
201 |
Q |
| |
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|||||||| |
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| T |
6136038 |
ctttgagg |
6136045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34459843 - 34459629
Alignment:
| Q |
1 |
ttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagattgaagattattggatagttat |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| || |||||||| || ||||| ||||||||||| || ||||||||||||| |||| |||||| |
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| T |
34459843 |
ttgcctctgcagttgattgttgcatgaagcaatatgacatatcacaagaagaggcttataaactcattctcaaggagattgaagatttatggagagttat |
34459744 |
T |
|
| Q |
101 |
gaatgaagagtgtctcaaattagactgcatcccaagcccagtgctcgaaagtattgttaatgtggcgcgagtagctgagttcacatacgaaaactttgag |
200 |
Q |
| |
|
|||||||||||| || |||||| || ||| ||||| |||||||| ||| ||||| ||||| | ||||||| | || | |||| ||||||| |||||||| |
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| T |
34459743 |
gaatgaagagtgcctaaaattacaccacattccaaggccagtgcttgaatgtattcttaattttgcgcgaggaactcacttcatatacgaagactttgag |
34459644 |
T |
|
| Q |
201 |
gataaatacacaaat |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
34459643 |
gataaatacacaaat |
34459629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 34448610 - 34448397
Alignment:
| Q |
1 |
ttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagattgaagattattggatagttat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| ||| || ||||| || |||||| || || || || ||||||||| || || |
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|
| T |
34448610 |
ttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataacttcattcgcaaggaaatcgagaattattggaaggtcat |
34448511 |
T |
|
| Q |
101 |
gaatgaagagtgtctcaaattagactgcatcccaagcccagtgctcgaaagtattgttaatgtggcgcgagtagctgagttcacatacgaaaactttgag |
200 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||||||| ||| |||| | |||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
34448510 |
gaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttgag |
34448411 |
T |
|
| Q |
201 |
gataaatacacaaa |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
34448410 |
gataaatacacaaa |
34448397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 34473874 - 34473648
Alignment:
| Q |
9 |
gcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactcattctgaaagagattgaagattattggatagttatgaatgaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| || || || || | |||| || || |||||||||| |||||| | ||| ||||||| |
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| T |
34473874 |
gcagttgaatgttgcatgaagcaatacaacatgtcacaagaagaggcctataagcacattaacaaggacattgaagatttttggatggatataaatgaag |
34473775 |
T |
|
| Q |
109 |
agtgtctcaaattagactgcatcccaagcccagtgctcgaaagtattgttaatgtggcgcgagtagctgagttcacatacgaaaactttgaggataaata |
208 |
Q |
| |
|
||| ||||| ||||||| |||||| | ||| ||||| ||| ||||| |||||||||| ||| || | |||||||| |||||||||| ||||||||||| |
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| T |
34473774 |
agttcctcaagttagactacatccccaaccctgtgcttgaatgtattcttaatgtggcacgaataaccgagttcacctacgaaaactacgaggataaata |
34473675 |
T |
|
| Q |
209 |
cacaaatggggaattgctgaaagacta |
235 |
Q |
| |
|
||||||||||||| || |||||||||| |
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| T |
34473674 |
cacaaatggggaactgttgaaagacta |
34473648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 34483900 - 34483733
Alignment:
| Q |
75 |
gagattgaagattattggatagttatgaatgaagagtgtctcaaattagactgcatcccaagcccagtgctcgaaagtattgttaatgtggcgcgagtag |
174 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| |||| ||| ||||| | ||||| |||| |||| |||||||||| ||| || |
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| T |
34483900 |
gagattgaagattattggataattatgaatgaagagtgcctcaagatagaaaacattccaaggtcggtgcttgaaattattcttaatgtggcacgaataa |
34483801 |
T |
|
| Q |
175 |
ctgagttcacatacgaaaactttgaggataaatacacaaatggggaattgctgaaagactacattgtt |
242 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||| |
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| T |
34483800 |
cagagttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgtt |
34483733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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