View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_14 (Length: 272)
Name: NF10765_low_14
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 2136244 - 2136000
Alignment:
| Q |
20 |
ctatcatagtaggtgctggtccttcaggtatagcagtagctgcttgtttatcagaacaaggagtaccaagtctcattcttgagagaagtgattgcatagc |
119 |
Q |
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| T |
2136244 |
ctatcatagtaggtgctggtccttcaggtatagcagtagctgcttgtttatcagagcaaggagtaccaagtctcattcttgagagaagtgattgcatagc |
2136145 |
T |
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| Q |
120 |
ttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaag |
219 |
Q |
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| T |
2136144 |
ttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaag |
2136045 |
T |
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| Q |
220 |
tatcctacaaaacatcagttcatttcctacatggaatcctatgct |
264 |
Q |
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| T |
2136044 |
tatcctacaaaacatcagttcatttcctacatggaatcctatgct |
2136000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 29857940 - 29857860
Alignment:
| Q |
110 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
190 |
Q |
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| T |
29857940 |
attgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
29857860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 39839088 - 39839170
Alignment:
| Q |
108 |
tgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
190 |
Q |
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| T |
39839088 |
tgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactaccta |
39839170 |
T |
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