View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_17 (Length: 249)
Name: NF10765_low_17
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12826087 - 12826304
Alignment:
| Q |
1 |
ctatctcccccacacacaactccttttggtttgacattgagtaaagtctaggatatttactcctaaacgtccggtctactcgccacttgacaatccaaaa |
100 |
Q |
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| T |
12826087 |
ctatctcccccacacacaactccttttggtttgacattgagtaaagtctaggatatttactcttaaacgtccggtccactcgccacttgacattccaaaa |
12826186 |
T |
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| Q |
101 |
actagaagtcaatccattaccaatagacaattccgaatttaaccactcttgaaaaccaaagttatctaaattgaccacatctttccacctccaatttgga |
200 |
Q |
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| T |
12826187 |
actagaagtcaatccattaccaatagacaattccgaatttaatcactcttgaaaaccaaagttatctaaattgaccacatctttccacctccaatttgga |
12826286 |
T |
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| Q |
201 |
gccattcgtccctccaac |
218 |
Q |
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|||||||||||||||||| |
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| T |
12826287 |
gccattcgtccctccaac |
12826304 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 47819593 - 47819540
Alignment:
| Q |
20 |
ctccttttggtttgacattgagtaaagtctaggatatttactcctaaacgtccg |
73 |
Q |
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||||||||| ||||| || ||| | |||||||| |||||||||||||||||||| |
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| T |
47819593 |
ctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccg |
47819540 |
T |
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