View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_19 (Length: 239)
Name: NF10765_low_19
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33415573 - 33415351
Alignment:
| Q |
1 |
tctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataaggacatttg |
100 |
Q |
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| T |
33415573 |
tctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataaggacatttg |
33415474 |
T |
|
| Q |
101 |
gaatacctttaatcctatatttagaaggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaac |
200 |
Q |
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| T |
33415473 |
gaatacctttaatcccatatttagaaggaataagttgattgtcatcaacattgaatttgaaaaactcgacctcacctgcatattcatttgccagctcaac |
33415374 |
T |
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| Q |
201 |
cattttgaaatcaacattcttgc |
223 |
Q |
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| T |
33415373 |
cattttgaaatcaacattcttgc |
33415351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33410138 - 33409926
Alignment:
| Q |
1 |
tctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataaggacatttg |
100 |
Q |
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| T |
33410138 |
tctcataggttttgtttaatatgtttgagaaacgttgtcttggatacgttatgaa---gtctatatctgtgttcaccattcttgaagaaaaggacagttg |
33410042 |
T |
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| Q |
101 |
gaatacctttaatcctatatttagaaggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaac |
200 |
Q |
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| T |
33410041 |
gaagaacttgaatccaatatgcataaggagcaagtcgattgtcatcaacattgagtttgaaaaacttgaccgcacctgcataatcatttgccagctcaac |
33409942 |
T |
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| Q |
201 |
cattttgaaatcaaca |
216 |
Q |
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| T |
33409941 |
cattttggaatgaaca |
33409926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 33397735 - 33397558
Alignment:
| Q |
27 |
gataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataaggacatttggaatacctttaatcctatatttagaa |
126 |
Q |
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|||||| |||||||||| || | ||||| || | ||||| |||||||||||| ||||||| || |||| |||||||||||| ||||| ||||| | | |
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| T |
33397735 |
gataaatgttgccttggttacatgaccaacaattatatctacttgttcaccattcttgaagaaaatgacagttggaataccttgaatcccatattcaaca |
33397636 |
T |
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| Q |
127 |
ggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaaccatt |
204 |
Q |
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| T |
33397635 |
ggaatattttgattgtcatccatatttagtttgtaaaactcgaccttaccctcataatcatttgccagctcaaccatt |
33397558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 33399811 - 33399744
Alignment:
| Q |
137 |
gattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaaccatt |
204 |
Q |
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|||| ||||||| |||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
33399811 |
gattctcatcaatattgagtttgtaaaaatcgaccttaccagcataatcatttgccagctcaaccatt |
33399744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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