View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10765_low_2 (Length: 509)

Name: NF10765_low_2
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10765_low_2
NF10765_low_2
[»] chr3 (6 HSPs)
chr3 (25-207)||(35189071-35189253)
chr3 (239-317)||(35188960-35189038)
chr3 (239-306)||(3861150-3861217)
chr3 (380-426)||(35188851-35188897)
chr3 (250-295)||(49019534-49019579)
chr3 (458-494)||(35188787-35188823)
[»] chr7 (2 HSPs)
chr7 (239-315)||(46135143-46135219)
chr7 (239-315)||(37587446-37587522)
[»] chr5 (2 HSPs)
chr5 (239-315)||(1554767-1554843)
chr5 (239-295)||(9102340-9102396)
[»] chr6 (2 HSPs)
chr6 (239-314)||(8001329-8001404)
chr6 (248-306)||(20473497-20473555)
[»] chr1 (2 HSPs)
chr1 (239-314)||(5242587-5242662)
chr1 (248-315)||(37306356-37306423)
[»] chr2 (5 HSPs)
chr2 (240-314)||(13467436-13467510)
chr2 (239-315)||(4639993-4640069)
chr2 (239-315)||(34099066-34099142)
chr2 (239-306)||(9483989-9484056)
chr2 (240-317)||(13464697-13464774)
[»] chr4 (4 HSPs)
chr4 (239-313)||(50091284-50091358)
chr4 (239-317)||(36280260-36280338)
chr4 (241-303)||(11942579-11942641)
chr4 (264-312)||(10065288-10065336)
[»] chr8 (4 HSPs)
chr8 (248-313)||(15282133-15282198)
chr8 (248-313)||(15462502-15462567)
chr8 (240-302)||(15311441-15311503)
chr8 (240-302)||(15491810-15491872)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 35189253 - 35189071
Alignment:
Q  25 aatagaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgttaagttaatgt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189253 aatagaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatgatgttaagttaatgt 35189154  T
Q  125 tcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtggaattgtctgtgcaaaaca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189153 tcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtggaattgtctgtgcaaaaca 35189071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 35189038 - 35188960
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35189038 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttct 35188960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 3861150 - 3861217
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 306  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3861150 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 3861217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 35188897 - 35188851
Alignment:
Q  380 gctctcattgaccattcgcagttattaacattcaacattttcccctc 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35188897 gctctcattgaccattcgcagttattaacattcaacattttcccctc 35188851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 49019534 - 49019579
Alignment:
Q  250 gagagttgaactcaagacctcccacttactaaacgggtgctctaac 295  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  49019534 gagagttgaactcaagacctcccgcttactaaacaggtgctctaac 49019579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 35188823 - 35188787
Alignment:
Q  458 gtcaaagatattcaacatttttcttttagtttgtgct 494  Q
    |||||||||||||||||||||||||||||||||||||    
T  35188823 gtcaaagatattcaacatttttcttttagtttgtgct 35188787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 46135219 - 46135143
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46135219 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 46135143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 37587446 - 37587522
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  37587446 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 37587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 1554843 - 1554767
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1554843 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 1554767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 9102396 - 9102340
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaac 295  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9102396 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 9102340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 8001404 - 8001329
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 314  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8001404 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 8001329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 20473497 - 20473555
Alignment:
Q  248 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20473497 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 20473555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 5242662 - 5242587
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 314  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5242662 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 5242587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 37306423 - 37306356
Alignment:
Q  248 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  37306423 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 37306356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 13467436 - 13467510
Alignment:
Q  240 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 314  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13467436 tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 13467510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 4639993 - 4640069
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  4639993 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 4640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 34099142 - 34099066
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 315  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  34099142 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 34099066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 9483989 - 9484056
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 306  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9483989 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 9484056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 13464697 - 13464774
Alignment:
Q  240 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 317  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||    
T  13464697 tgctctcgttaaaagttgaattcaagacctcccgcttactaaacaagtgctctaaccaactgagctacaagagcttct 13464774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 50091358 - 50091284
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  50091358 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacaggtgctctaaccaactgagctacgagagc 50091284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 36280338 - 36280260
Alignment:
Q  239 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttct 317  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  36280338 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttct 36280260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 11942579 - 11942641
Alignment:
Q  241 gctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgag 303  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  11942579 gctctcgttgagagtcgaactcaagacgtcccgcttactaaacgggtgatctaaccaactgag 11942641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 10065336 - 10065288
Alignment:
Q  264 agacctcccacttactaaacgggtgctctaaccaactgagctacgagag 312  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10065336 agacctcccgcttactaaacgggtgctctaaccaaatgagctacgagag 10065288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 15282133 - 15282198
Alignment:
Q  248 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 313  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15282133 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15282198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 15462502 - 15462567
Alignment:
Q  248 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 313  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15462502 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15462567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 15311441 - 15311503
Alignment:
Q  240 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 302  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15311441 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15311503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 15491810 - 15491872
Alignment:
Q  240 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 302  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15491810 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University