View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10765_low_20 (Length: 239)

Name: NF10765_low_20
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10765_low_20
NF10765_low_20
[»] chr3 (2 HSPs)
chr3 (1-201)||(44375365-44375565)
chr3 (128-167)||(47079003-47079042)
[»] chr1 (2 HSPs)
chr1 (124-167)||(41614431-41614474)
chr1 (154-200)||(4411305-4411352)
[»] chr2 (4 HSPs)
chr2 (152-192)||(29229774-29229814)
chr2 (152-192)||(29343074-29343114)
chr2 (169-199)||(41031538-41031568)
chr2 (164-200)||(4908829-4908865)
[»] chr8 (3 HSPs)
chr8 (154-200)||(35775236-35775283)
chr8 (2-73)||(39498414-39498485)
chr8 (128-161)||(23979465-23979498)
[»] chr5 (3 HSPs)
chr5 (128-167)||(12588023-12588062)
chr5 (129-167)||(33245189-33245227)
chr5 (154-197)||(10860096-10860140)
[»] chr4 (3 HSPs)
chr4 (166-200)||(28178857-28178891)
chr4 (126-167)||(24364100-24364141)
chr4 (126-167)||(49979826-49979867)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 44375365 - 44375565
Alignment:
Q  1 gctaccagtgtcaatatcaagaaaatatggccttggtgggtacccaatgttgatagtcacattataaaacctgtatatgttaaaagtatgggagacttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44375365 gctaccagtgtcaatatcaagaaaatatggccttggtgggtacccaatgttgatagtcacattataaaacctgtatatgttaaaagtatgggagatttgt 44375464  T
Q  101 attagtgtctttgtttctccgcctaacaaaaattgattttgaattaattaattatgtaaaagtgattgaacaataaatttaaggctaaaaatcaattgta 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44375465 attagtgtctttggttctccgcctaacaaaaattgattttgaattaattaattatgtaaaagtgattgaacaataaatttaaggctaaaaatcaattgta 44375564  T
Q  201 a 201  Q
    |    
T  44375565 a 44375565  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 47079003 - 47079042
Alignment:
Q  128 aaaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  47079003 aaaaattgattttgaattaattaattatgaaaaattgatt 47079042  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 41614474 - 41614431
Alignment:
Q  124 taacaaaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||||| |||||||||||||||||||||||||| |||||    
T  41614474 taacaaaaattaattttgaattaattaattatgtaaaattgatt 41614431  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4411352 - 4411305
Alignment:
Q  154 atgtaaaagt-gattgaacaataaatttaaggctaaaaatcaattgta 200  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4411352 atgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgta 4411305  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 29229774 - 29229814
Alignment:
Q  152 ttatgtaaaagtgattgaacaataaatttaaggctaaaaat 192  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  29229774 ttatgtaaaagtgattgaacaataaatttaaacctaaaaat 29229814  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 29343074 - 29343114
Alignment:
Q  152 ttatgtaaaagtgattgaacaataaatttaaggctaaaaat 192  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  29343074 ttatgtaaaagtgattgaacaataaatttaaacctaaaaat 29343114  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Original strand, 41031538 - 41031568
Alignment:
Q  169 aacaataaatttaaggctaaaaatcaattgt 199  Q
    |||||||||||||||||||||||||||||||    
T  41031538 aacaataaatttaaggctaaaaatcaattgt 41031568  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4908865 - 4908829
Alignment:
Q  164 gattgaacaataaatttaaggctaaaaatcaattgta 200  Q
    |||||||||||||| |||||||| |||||||||||||    
T  4908865 gattgaacaataaagttaaggctgaaaatcaattgta 4908829  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 35775283 - 35775236
Alignment:
Q  154 atgtaaaagtg-attgaacaataaatttaaggctaaaaatcaattgta 200  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  35775283 atgtaaaagtggattgaacaatgaattcaaggctaaaaatcaattgta 35775236  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 39498414 - 39498485
Alignment:
Q  2 ctaccagtgtcaatatcaagaaaatatggccttggtgggtacccaatgttgatagtcacattataaaacctg 73  Q
    ||||| ||||||| |||||||||||| ||||||||||| |  || ||||||| ||| |||||||| ||||||    
T  39498414 ctaccggtgtcaacatcaagaaaatagggccttggtggttggcctatgttgagagtaacattatagaacctg 39498485  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 23979498 - 23979465
Alignment:
Q  128 aaaaattgattttgaattaattaattatgtaaaa 161  Q
    |||||||||||||||||||||||||| |||||||    
T  23979498 aaaaattgattttgaattaattaattttgtaaaa 23979465  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 12588023 - 12588062
Alignment:
Q  128 aaaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  12588023 aaaaattgattttgagttaattaattatgtaaaattgatt 12588062  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 33245227 - 33245189
Alignment:
Q  129 aaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33245227 aaaattgattttgaattaattaattttgtaaaactgatt 33245189  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 10860096 - 10860140
Alignment:
Q  154 atgtaaaagtga-ttgaacaataaatttaaggctaaaaatcaatt 197  Q
    |||||||||||| |||||||||||| || ||||||||||||||||    
T  10860096 atgtaaaagtgagttgaacaataaagttgaggctaaaaatcaatt 10860140  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 28178857 - 28178891
Alignment:
Q  166 ttgaacaataaatttaaggctaaaaatcaattgta 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  28178857 ttgaacaataaatttaaggctaaaattcaattgta 28178891  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 24364100 - 24364141
Alignment:
Q  126 acaaaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  24364100 acaaaaattgattttgaatgaattgattatgtaaaattgatt 24364141  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 49979867 - 49979826
Alignment:
Q  126 acaaaaattgattttgaattaattaattatgtaaaagtgatt 167  Q
    ||||||||| ||||||||| |||||||||||||||| |||||    
T  49979867 acaaaaattaattttgaataaattaattatgtaaaattgatt 49979826  T

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