View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10765_low_24 (Length: 216)
Name: NF10765_low_24
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27772481 - 27772278
Alignment:
| Q |
1 |
cctttatctttaacctatgcttccaatcattgttttgacaataatgtaatatataagctttgagtatattttcttattgaagaagcttgtttacaacttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27772481 |
cctttatctttaacctatccttccaatcattgttttgacaataatgtaatatataagctttgagtatattttcttattgaagaagcttgtttacaacttc |
27772382 |
T |
|
| Q |
101 |
ttgctttatttgtaagagcttcttttcattttccactacctaaaaaagattgttcatggaatagtatttagcaaggtttctatagagttcacaactgcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27772381 |
ttgctttatttgtaagagcttcttttcattttccactacctaaaaaagattgttcatggaatagtatttagcaaggtttctatagagttcacaactgcga |
27772282 |
T |
|
| Q |
201 |
tctg |
204 |
Q |
| |
|
|||| |
|
|
| T |
27772281 |
tctg |
27772278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University