View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_3 (Length: 448)
Name: NF10765_low_3
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 115 - 336
Target Start/End: Original strand, 2256821 - 2257041
Alignment:
| Q |
115 |
gtgttgaagttagtagttggaagcaacatttcatggataaatgggtgggagactctgtttctgaatgcagatgaaagaaaatgtagtagtagatattttc |
214 |
Q |
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| T |
2256821 |
gtgttgaagttagtagttggaagcaacatttcatggataaatgggtgggagactctgtttctgaatgcagatgaaagaaaatgtcgtagtagatattttc |
2256920 |
T |
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| Q |
215 |
aaatgnnnnnnnnnnnnnnngttaagagagacaaattcaaaaataaagtttatcttttctaaattaactatatgcactatannnnnnnacatatatattt |
314 |
Q |
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| T |
2256921 |
aaatgttttttttttttttt-ttgttagagacaaattcaaaaataaagtttatcttttctaaattaactatatgcactatatttttttacatatatattt |
2257019 |
T |
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| Q |
315 |
taataaataatattccctacag |
336 |
Q |
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|||||||||||||||||||||| |
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| T |
2257020 |
taataaataatattccctacag |
2257041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 2256721 - 2256756
Alignment:
| Q |
15 |
gagggtgtgggaattagaagaggaggtgcgaatagt |
50 |
Q |
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| T |
2256721 |
gagggtgtgggaattagaagaggaggtgcgaatagt |
2256756 |
T |
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