View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_4 (Length: 431)
Name: NF10765_low_4
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 37135991 - 37136408
Alignment:
| Q |
7 |
tcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135991 |
tcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctc |
37136090 |
T |
|
| Q |
107 |
gatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtcatcttgaccc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
37136091 |
gatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatcttgaccc |
37136190 |
T |
|
| Q |
207 |
tattgctgttatagccctcatagccatcgccactcttgcagtcttgagcaccagaatctcttctctcttcaacaaaattgcaactatctttcatttagtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37136191 |
tattgctgttatagccctcatagccatcgccactcttgcagtcttgagcaccagaatctcttctctcttcaacaaaattgcaacaatctttcatttagtt |
37136290 |
T |
|
| Q |
307 |
gtcattgccttcatcatcattgttggcctaatcaacgccaaccccgaaaattacgcttcatttgctccttttggtaccagaggtgtttttaaagcctcgg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136291 |
gtcattgccttcatcatcattgttggcctaatcaacgccaaccccgaaaactacgcttcatttgctccttttggtaccagaggtgtttttaaagcctcgg |
37136390 |
T |
|
| Q |
407 |
ctgttcttttctctgctt |
424 |
Q |
| |
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|||||||||||| ||||| |
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| T |
37136391 |
ctgttcttttctttgctt |
37136408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 37120262 - 37120021
Alignment:
| Q |
7 |
tcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctc |
106 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || || || || ||||||| |
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|
| T |
37120262 |
tcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcggcggtagctc |
37120163 |
T |
|
| Q |
107 |
gatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtcatcttgaccc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
37120162 |
gatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctgattatggccatcttgaccc |
37120063 |
T |
|
| Q |
207 |
tattgctgttatagccctcatagccatcgccactcttgcagt |
248 |
Q |
| |
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||||||| || |||||| |||||||| | |||||||||| |
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| T |
37120062 |
tattgctattggagccctagtagccatcacagctcttgcagt |
37120021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 37112007 - 37111801
Alignment:
| Q |
7 |
tcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctc |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||| |||| ||| | ||||| || || ||||||| |
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|
| T |
37112007 |
tcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccgcggtagctc |
37111908 |
T |
|
| Q |
107 |
gatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtcatcttgaccc |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||| |||||| ||||| ||||||||||| |
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| T |
37111907 |
gatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatcttgaccc |
37111808 |
T |
|
| Q |
207 |
tattgct |
213 |
Q |
| |
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||||||| |
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|
| T |
37111807 |
tattgct |
37111801 |
T |
|
Back To:
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