View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_8 (Length: 323)
Name: NF10765_low_8
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 56 - 305
Target Start/End: Original strand, 34590783 - 34591032
Alignment:
| Q |
56 |
aaatgatgaaaggcaacctgaaattgatgagcaaaaaatgttgtagtatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaa |
155 |
Q |
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| T |
34590783 |
aaataatgaaaggcaacctgaaattgatgagcaaaaaatgttatagcatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaa |
34590882 |
T |
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| Q |
156 |
gcagaagccctgcatatctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaac |
255 |
Q |
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| T |
34590883 |
gcagaagccctgcatatctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaac |
34590982 |
T |
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| Q |
256 |
atcgtatgaataatttgctaagcatggtcatctaagaaacaacctataat |
305 |
Q |
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| T |
34590983 |
atcatatgaataatttgctaagcatggtcatctaagaaacaacctataat |
34591032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 34590728 - 34590767
Alignment:
| Q |
22 |
acaaggtaacctacaacgcaagcaatcatagtgaaaatga |
61 |
Q |
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| T |
34590728 |
acaaggtaacctacaacgcaagcaatcatagtgaaaatga |
34590767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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