View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10765_low_9 (Length: 303)
Name: NF10765_low_9
Description: NF10765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10765_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 43097470 - 43097183
Alignment:
| Q |
1 |
taatgcttcagatacttttcctgcctgacagaacccaataagtagaattatatatggagctaatttaaaatctctggccttgaagtccacttcaagtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43097470 |
taatgcttcagatacttttcctgcctgacataacccaataagtagaattgtatatggaactaatttaaaatctctggccttgaagtccacttcaagtaaa |
43097371 |
T |
|
| Q |
101 |
cctcaaatcacttgttccaacttttctccgaataaatatttttctagagtactgattgagtcattgtcccgactaggaaggctcttcaaatattccaaat |
200 |
Q |
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| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43097370 |
cttcgaatcacttgttctaatttttctccgaataaatatttttctagagtactgattgagtcgttgtcccgactaggaaggctcttcaaatattccaaat |
43097271 |
T |
|
| Q |
201 |
aaagagtgaatgcccgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgagagggtaggttcagagccagt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43097270 |
aaagagtgaatgcccgtgagaccttgctctttctacataaacaagtcataagtgttctataaactgagagggtaggttcagagccagt |
43097183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 6779993 - 6779706
Alignment:
| Q |
1 |
taatgcttcagatacttttcctgcctgacagaacccaataagtagaattatatatggagctaatttaaaatctctggccttgaagtccacttcaagtaaa |
100 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6779993 |
taatgcttcggatacttttcctgcttgacagaacccaataagtagaattgtatatggagctaatttaaaatctctggccttgaagtccagttcaagtaaa |
6779894 |
T |
|
| Q |
101 |
cctcaaatcacttgttccaacttttctccgaataaatatttttctagagtactgattgagtcattgtcccgactaggaaggctcttcaaatattccaaat |
200 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6779893 |
cctcgaatcacttgttccaatttttctccgaataaatatttttctagagtactgattgagtcgttgtcccgactaggaaggctcttcaaatgttccaaat |
6779794 |
T |
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| Q |
201 |
aaagagtgaatgcccgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgagagggtaggttcagagccagt |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6779793 |
aaagagtgaatgcacgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgaaagggtaggttcagagccagt |
6779706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 17487085 - 17487372
Alignment:
| Q |
1 |
taatgcttcagatacttttcctgcctgacagaacccaataagtagaattatatatggagctaatttaaaatctctggccttgaagtccacttcaagtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17487085 |
taatgcttcagatacttttcctgcttgacagaacccaataagtagaattgtatatggagctaatttaaaatctctggccttgaagtccagttcaagtaaa |
17487184 |
T |
|
| Q |
101 |
cctcaaatcacttgttccaacttttctccgaataaatatttttctagagtactgattgagtcattgtcccgactaggaaggctcttcaaatattccaaat |
200 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
17487185 |
cctcgaatcacttgttccaatttttctccgaataaatatttttctagagcactgattgagtcgttgtcccgactaggaaggctcttcaaatgttcgaaat |
17487284 |
T |
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| Q |
201 |
aaagagtgaatgcccgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgagagggtaggttcagagccagt |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17487285 |
aaagagtgaatgcacgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgaaagggtaggttcagagccagt |
17487372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 22424565 - 22424282
Alignment:
| Q |
1 |
taatgcttcagatacttttcctgcctgacagaacccaataagtagaattatatatggagctaatttaaaatctctggccttgaagtccacttcaagtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22424565 |
taatgcttcagatacttttcctgcttgacagaacccaataagtagaattgtatatggagctaatttaaaatctctggccttgaagtccagttcaagtaaa |
22424466 |
T |
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| Q |
101 |
cctcaaatcacttgttccaacttttctccgaataaatatttttctagagtactgattgagtcattgtcccgactaggaaggctcttcaaatattccaaat |
200 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
22424465 |
cctcgaatcacttgttccaatttttctccgaataaatatttttctagagtactgattgagtcgttgtcccgactaggaaggctcttcaaatgttccaaat |
22424366 |
T |
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| Q |
201 |
aaagagtgaatgcccgtgagaccttgctctttctacacaaacaagtcataagtgttctataaactgagagggtaggttcagagc |
284 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22424365 |
aaagagtgaatgcacatgagaccttgctctttctacacaaacaagtcataagtgttctataaactgaaagggtaggttcagagc |
22424282 |
T |
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