View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10766_1 (Length: 645)
Name: NF10766_1
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 55507049 - 55506458
Alignment:
| Q |
1 |
agtactaggcagcaaagcttgtagagaaagcaaaaggaggtcactaggtgattagcatgtgattatgattacttagctaatttgagagaaacatgatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55507049 |
agtactaggcagcaaagcttgtagagaaagcaaaaggaggtcactaggtgattagcatgtgattatgatt------------tgagagaaacatgatcct |
55506962 |
T |
|
| Q |
101 |
cgtttctttgtattgccttcaagcacatgaagcaataatggtttttactttactaaccaacaaacatgcnnnnnnnnnnnnnnnn-gcgttggtcgtata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
55506961 |
cgtttctttgtattgccttcaagcacatgaagcaataatggtttttactttactaaccaacaaacatgcaaaaaataaaacaaaaagcgttggtcggata |
55506862 |
T |
|
| Q |
200 |
catagagtag---gtaaacacgagacatgttgttttaatttttgctttttctaaatataagaattgggtgcaaaatgtttgcgtctttgattttgaatgt |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55506861 |
catagagtagtaggtaaacacgagacatgttgttttaatttttgttttttctaaatataagaattgggtgcaaaatgtttgtgtctttgattttgaatgt |
55506762 |
T |
|
| Q |
297 |
acatttaagatgacttttaacatgaactaggtctaggaaaagaaattaaaaatctaaccttctttcaacggcagagtgtgcaaagacaaaatcaagacat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55506761 |
acatttaagatgacttttaacatgaactaggagtcg------aaattaaaaatctaaccttctttcaacagcagagtgtgcaaagacaaaatcaagacat |
55506668 |
T |
|
| Q |
397 |
tacaactacgtttagtaccccttagccgccattctagagatattatgaaaataaagcgaatgatagaaagacggcgatagaccaaaacgaacgaagcgaa |
496 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||| |
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| T |
55506667 |
tacaactacgtt-agtaccccttagccgccattctagagatattatgaaaataaagagaaagatagaaagac--------acttgtgcgaacgaagcgaa |
55506577 |
T |
|
| Q |
497 |
ctcaacatttgcatcaataagaccttgtcaggaaaatccagggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55506576 |
ctcaacatttgcatcaataagaccttgtcaggaaaatccagggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaa |
55506477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 43633045 - 43633245
Alignment:
| Q |
60 |
tgattatgattacttagctaatttgagagaaacatgatcctcgtttctttgtattgccttcaag---cacatgaagcaataatggtttttac--tttact |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
43633045 |
tgattatgattacttagctaatttgagagaaacatgatcgtcgtttctttgcattgccttcaagtaacacatgaagcaataatggtttttactttttact |
43633144 |
T |
|
| Q |
155 |
aaccaacaaacatgc-nnnnnnnnnnnnnnnngcgttggtcgtatacatagagtaggtaaacacgagacatgttgttttaatttttgctttttctaaata |
253 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | |||| |||||| |
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|
| T |
43633145 |
aaccaataaacatgcaaaaaaataaaacaaaagcgttggtcggatacatagagtaggtacacacgagacatgttcttttaatttttaccttttataaata |
43633244 |
T |
|
| Q |
254 |
t |
254 |
Q |
| |
|
| |
|
|
| T |
43633245 |
t |
43633245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 271
Target Start/End: Complemental strand, 43997128 - 43996919
Alignment:
| Q |
60 |
tgattatgattacttagctaatttgagagaaacatgatcctcgtttctttgtattgccttcaag---cacatgaagcaataatggtttttactttactaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43997128 |
tgattatgattacttagctaatttgagagaaacatgatcgt-------ttgcattgccttcaagtaacacatgaagcaataatggtttttactttactaa |
43997036 |
T |
|
| Q |
157 |
ccaacaaacatgcnnnnnnnnnnnnnnnngcgt--tggtcgtatacatagagtaggtaaacacgagacatgttgttttaatttttgctttttctaaatat |
254 |
Q |
| |
|
|||| |||||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||| |
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|
| T |
43997035 |
ccaataaacatgcaaaaaaaataaaacaatagtattggtcggatacatagagtaggtacacacgagacatgttcttttaatttttgccttttataaatat |
43996936 |
T |
|
| Q |
255 |
aagaattgggtgcaaaa |
271 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
43996935 |
aagaattgggtgaaaaa |
43996919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 43997415 - 43997362
Alignment:
| Q |
3 |
tactaggcagcaaagcttgtagagaaagcaaaaggaggtcactaggtgattagc |
56 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43997415 |
tactagccggcaaaacttgtagagaaagcaaaaggaggtcactaggtgattagc |
43997362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 43632784 - 43632835
Alignment:
| Q |
3 |
tactaggcagcaaagcttgtagagaaagcaaaaggaggtcactaggtgatta |
54 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
43632784 |
tactagccagcaaaacttgtagagaaagcaaaaggaggtcattagttgatta |
43632835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 533
Target Start/End: Complemental strand, 43996561 - 43996514
Alignment:
| Q |
486 |
aacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaat |
533 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
43996561 |
aacgaagagaactcaacattcacatcaataagaccttgtgaggaaaat |
43996514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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