View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10766_2 (Length: 498)
Name: NF10766_2
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 30467918 - 30467445
Alignment:
| Q |
15 |
aacctgtgaagtgatgacgcccccacttttaaacacatgcccttatcgtctctcatcgaagtatgtatgtatgaacacattatatggcaaaggaaattta |
114 |
Q |
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| T |
30467918 |
aacctgtgaagtgatgacgcccccatttttaaacacatacccttatcgtctctcatcgaagtatgtatgtatg---------tatggcgaaggaaattta |
30467828 |
T |
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| Q |
115 |
gtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaatga |
214 |
Q |
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| T |
30467827 |
gtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaatga |
30467728 |
T |
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| Q |
215 |
tggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatattcga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467727 |
tggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatattcga |
30467628 |
T |
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| Q |
315 |
caacatacataattatgtgctatatttatatatgttggtaaatatgacaatactaaaatttgtatactgtcaatcttgtctttaaaaaggatccaaaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467627 |
caacatacataattatgtgctatatttatatatgttggtaaatatgacaatact--aatttgtatactgtcaatcttgtctttaaaaaggatccaaaatt |
30467530 |
T |
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| Q |
415 |
cagagaagaaaacaacgtgcatggctccaaaa-agtaaagtaatgtaatgaatagttaccactgttgtcggaggtggtgggaaac |
498 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30467529 |
cagagaagaaaacaacgtgcatggctccaaaatagtaaagtgatgtaatgaatagttaccactgttgtcagaggtggtgggaaac |
30467445 |
T |
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