View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10766_4 (Length: 407)
Name: NF10766_4
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Complemental strand, 48492430 - 48492044
Alignment:
| Q |
6 |
taaaagatgagatattctgcatgtttgagggagctctagacaatttagggagattaaggcaacaatatggactagccaagtcagctaatgaagttgtttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48492430 |
taaaagatgagatattctgcatgtttgagggagctctagacaatttagggagattaaggcaacaatatggactagccaagtcagctaatgaagttgtttt |
48492331 |
T |
|
| Q |
106 |
ggtgattgaggcttacaaagctttacgtgacagagcaccttatcctcccaatcacgttgttggtcatctcagtggtacttttgctttcatactttttgac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48492330 |
ggtgattgaggcttacaaagctttacgtgacagagcaccttatcctcccaatcacgttgttggtcatctcagtggcacttttgctttcatactttttgac |
48492231 |
T |
|
| Q |
206 |
aaatccacttctactctttttgtggcctctgtaagcactaatcttaaactaagttttcaaggtttcttgtttaaatttctttccacattttgcttagtgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48492230 |
aaatccacttctactctttttgtggcctctgtaagcactaatcttaaactaagttttcaaggtttcttgtttaaatttctttccacattttgcttagtgt |
48492131 |
T |
|
| Q |
306 |
attattttcttcgacaggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcattttctgatgatg |
392 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48492130 |
attattttttttgacaggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcatttgctgatgatg |
48492044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 7794882 - 7795087
Alignment:
| Q |
11 |
gatgagatattctgcatgtttgagggagctctagacaatttagggagattaaggcaacaatatggactagccaagtcagctaatgaagttgttttggtga |
110 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||||||||| || || || ||||||||||| | || || || |||||||| ||| | ||| |
|
|
| T |
7794882 |
gatgagatattctgcttgtttgaaggatctctagacaatttagggagcttgagacagcaatatggactttcaaaatctgcaaatgaagtagttcttatga |
7794981 |
T |
|
| Q |
111 |
ttgaggcttacaaagctttacgtgacagagcaccttatcctcccaatcacgttgttggtcatctcagtggtacttttgctttcatactttttgacaaatc |
210 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||| ||| | ||||| |||||||| ||||| ||||||| ||||||||||||| |||| ||||| || |
|
|
| T |
7794982 |
ttgaggcttacaaagctttacgcgatcgtgcaccttaccctgctaatcatgttgttggccatcttagtggtagttttgctttcatagttttcgacaagtc |
7795081 |
T |
|
| Q |
211 |
cacttc |
216 |
Q |
| |
|
|||||| |
|
|
| T |
7795082 |
cacttc |
7795087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 7795196 - 7795267
Alignment:
| Q |
321 |
aggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcattttctgatgatg |
392 |
Q |
| |
|
|||| |||| ||| ||||| || |||| ||||||||||||||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
7795196 |
aggaccaatctggaaaggttcctctatattggggaataactgctgatggctatgtagcctttgctgatgatg |
7795267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University