View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10766_6 (Length: 330)
Name: NF10766_6
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 34745282 - 34745599
Alignment:
| Q |
13 |
aaggggaggtcaatgtcaacagatgaagtgtttgtgtcatttaagaacaatagtgcaatttcttctattcataacaaacaagaataataactatatatta |
112 |
Q |
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| T |
34745282 |
aaggggaggtcaatgtcaacagatgaagtgtttgtgtcatttaagaacaatagtgcaatttcttctattcataacaaacaagaataataactatatatta |
34745381 |
T |
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| Q |
113 |
ttgaagaaaactgaattgagtggtggtgtttaccaaagctctagatggagcacgccaagacatgccttcctctgcagaatcataatgatgacgaccactc |
212 |
Q |
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| T |
34745382 |
ttgaagaaaactgaattgagtggtggtgtttaccaaagctctagatggagcacgccaagacatgccttcctctgcagaatcataatgatgacgaccactc |
34745481 |
T |
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| Q |
213 |
cttcctctattggacccacctttgaaaagcttactgagccatttcatgaaaccagactttctctctgggtgtgaagacacataatcccctgcttaccacc |
312 |
Q |
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| T |
34745482 |
cttcctctattggacccacctttgaaaagcttactgagccatttcatgaaaccagactttctctctgggtgtgaagacacataatcccctgcttaccacc |
34745581 |
T |
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| Q |
313 |
aaattttcatgattcaat |
330 |
Q |
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| T |
34745582 |
aaattttcatgattcaat |
34745599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 31053442 - 31053326
Alignment:
| Q |
199 |
gatgacgaccactccttcctctattggacccacctttgaaaagcttactgagccatttcatgaaaccagactttctctctgggtgtgaagacacataatc |
298 |
Q |
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| T |
31053442 |
gatgaccaccaccccttcctctattggatccaattttgaaaatcttgccaaaccatttcataaaaccagacttcctctctgagtatgaagaagaaaaatc |
31053343 |
T |
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| Q |
299 |
ccctgcttaccaccaaa |
315 |
Q |
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| T |
31053342 |
ccctgtttcccaccaaa |
31053326 |
T |
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