View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10766_high_1 (Length: 232)
Name: NF10766_high_1
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 37749824 - 37750023
Alignment:
| Q |
13 |
caaaggggtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgtttagtcccatacacaaagccattagtagaggttgtatgcaa |
112 |
Q |
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| T |
37749824 |
caaaagggtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgtttagtcccatacacacagccattagtagaggttgtatgcaa |
37749923 |
T |
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| Q |
113 |
tgcctccacataactaactttatttattcatgaatttatgtttgatatgagttgaataattacgtactgatattagctaattgattttaaaataattcca |
212 |
Q |
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| T |
37749924 |
tgcctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaatt-attttaaaataattcca |
37750022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 37734357 - 37734545
Alignment:
| Q |
18 |
gggtttgtagttattgtttgtggttcctatagtat----atttagcttgtgctactgtttagtcccatacacaaagccattagtagaggttgtatgcaat |
113 |
Q |
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| T |
37734357 |
gggtttatagttattgtttgtggctcctatagtattgttatttagcttgtgctactgttaagtcccgtatacactgcgattggtaaaggttgtaagcaat |
37734456 |
T |
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| Q |
114 |
gcctccacataactaactttatttattcatgaatttatgtttgatatgagttgaataattacgtactgatattagctaattgattttaaaataattccat |
213 |
Q |
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| T |
37734457 |
gc-----------tagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccat |
37734545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 38612572 - 38612500
Alignment:
| Q |
139 |
ttcatgaatttatgtttgatatgagttgaataattacgtactgatattagctaattgattttaaaataattcc |
211 |
Q |
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| T |
38612572 |
ttcatgaatttatgtttgatatgaattgaataattatatattcatattagctaattaattttaaaataattcc |
38612500 |
T |
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