View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10766_low_1 (Length: 408)
Name: NF10766_low_1
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 30467448 - 30467838
Alignment:
| Q |
1 |
tcccaccacctccgacaacagtggaaactattcaatacacaactttact-tataggacccatgcacgttgttttcttctctgaattttggatccttttta |
99 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||| |||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467448 |
tcccaccacctctgacaacagtggtaactattcattacatcactttactattttggagccatgcacgttgttttcttctctgaattttggatccttttta |
30467547 |
T |
|
| Q |
100 |
aagacaagattgacagtatacaaattttagtattgtcatatttaccaacatatataaatatagcacataattatgtatgttgtcgaatatatatttactc |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467548 |
aagacaagattgacagtatacaaatt--agtattgtcatatttaccaacatatataaatatagcacataattatgtatgttgtcgaatatatatttactc |
30467645 |
T |
|
| Q |
200 |
acaaacacatacacaaactatactccatatataagtttggctgactgaccatagaggaaaataacataacatgcagagaccatcatttggatgtccaatc |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467646 |
acaaacacatacacaaactatactccatatataagtttggctgactgaccatagaggaaaataacataacatgcagagaccatcatttggatgtccaatc |
30467745 |
T |
|
| Q |
300 |
cccggccatggcatgtgtaaagcagatcacggcattagcacccctcctgctcccggtcacttcttcgacttacaaccggtactaaatttcctt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467746 |
cccggccatggcatgtgtaaagcagatcacggcattagcacccctcctgctcccggtcacttcttcgacttacaaccggtactaaatttcctt |
30467838 |
T |
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