View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10766_low_2 (Length: 312)
Name: NF10766_low_2
Description: NF10766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10766_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 32590363 - 32590662
Alignment:
| Q |
1 |
taattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590363 |
taattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcat |
32590462 |
T |
|
| Q |
101 |
aatataggaaaatgaagaaaataattgattttttcttttctttcatgactcaattattacgcaaaaagtgacattgtataatgttggaatgtgagttatc |
200 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| ||||| |
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| T |
32590463 |
aatataggaaaatgaagaaaataattggtttt--cttttctttcatgattcaattattatgcaaaaagagacatcgtataatgtgagaatgtgaattatc |
32590560 |
T |
|
| Q |
201 |
atattaatttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttccccta |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590561 |
atattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttccccta |
32590660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32600811 - 32600946
Alignment:
| Q |
1 |
taattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcct-aggga-ggaataaagttagttggtc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
32600811 |
taattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtc |
32600910 |
T |
|
| Q |
99 |
ataatataggaaaatgaagaaaataattgatttttt |
134 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
32600911 |
ataatataagaaaatgaagaaaataattgatttttt |
32600946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 32601022 - 32601133
Alignment:
| Q |
191 |
gtgagttatcatattaatttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
290 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32601022 |
gtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttc |
32601121 |
T |
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| Q |
291 |
ctttcccctatg |
302 |
Q |
| |
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| ||||||||| |
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| T |
32601122 |
ccatcccctatg |
32601133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 24883595 - 24883553
Alignment:
| Q |
4 |
ttaccattccatcctccaggtccagcataagatgcccatttat |
46 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccatttat |
24883553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
212 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacact |
266 |
Q |
| |
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|||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 34594091 - 34594181
Alignment:
| Q |
212 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
302 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
34594091 |
acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg |
34594181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 34578123 - 34578242
Alignment:
| Q |
1 |
taattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || | ||||||||| ||||| ||| |
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| T |
34578123 |
taattaccattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaagtagaataaagtcagttgatcac |
34578222 |
T |
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| Q |
101 |
aatataggaaaatgaagaaaa |
121 |
Q |
| |
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|| ||| |||||||||||||| |
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| T |
34578223 |
aacata-gaaaatgaagaaaa |
34578242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 34593913 - 34593992
Alignment:
| Q |
1 |
taattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||| |
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| T |
34593913 |
taattaccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag |
34593992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 34578398 - 34578470
Alignment:
| Q |
219 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcc |
291 |
Q |
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||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
34578398 |
ccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcc |
34578470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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