View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10767_high_1 (Length: 429)

Name: NF10767_high_1
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10767_high_1
NF10767_high_1
[»] chr7 (6 HSPs)
chr7 (19-429)||(7278557-7278970)
chr7 (19-429)||(7374869-7375282)
chr7 (213-263)||(7278543-7278593)
chr7 (213-263)||(7375246-7375296)
chr7 (140-196)||(7278520-7278576)
chr7 (140-196)||(7375263-7375319)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 7278970 - 7278557
Alignment:
Q  19 gggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa 118  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7278970 gggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa 7278871  T
Q  119 ttgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7278870 ttgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggtgaggtgaattgtatggag 7278771  T
Q  219 aaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaa---agaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||     
T  7278770 aaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaag 7278671  T
Q  316 ataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtg 415  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7278670 atcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtg 7278571  T
Q  416 taaggaggagaatg 429  Q
    ||||||||||||||    
T  7278570 taaggaggagaatg 7278557  T

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Target: chr7; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 7374869 - 7375282
Alignment:
Q  19 gggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa 118  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7374869 gggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa 7374968  T
Q  119 ttgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7374969 ttgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggag 7375068  T
Q  219 aaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaat 315  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||     
T  7375069 aaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaag 7375168  T
Q  316 ataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtg 415  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7375169 atcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttatggaagaaggaggagatggaggaagaagatagggggtg 7375268  T
Q  416 taaggaggagaatg 429  Q
    ||||||||||||||    
T  7375269 taaggaggagaatg 7375282  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
Q  213 atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa 263  Q
    |||||| ||||||| ||||||||| | ||| ||||||||||||||||||||    
T  7278593 atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa 7278543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
Q  213 atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa 263  Q
    |||||| ||||||| ||||||||| | ||| ||||||||||||||||||||    
T  7375246 atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa 7375296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
Q  140 ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga 196  Q
    ||||||| | |||||||||||||| ||| | ||| |||||||||||| |||||||||    
T  7278576 ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga 7278520  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
Q  140 ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga 196  Q
    ||||||| | |||||||||||||| ||| | ||| |||||||||||| |||||||||    
T  7375263 ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga 7375319  T

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