View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_high_4 (Length: 357)
Name: NF10767_high_4
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 37795829 - 37795496
Alignment:
| Q |
17 |
attcagttagccacgatgcattgaccaatatggttagttttgtccataaatatcacacttgcatatttaattcaacacacacaattaatcaatcaaaatc |
116 |
Q |
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| T |
37795829 |
attcagttagccacgatgcattgaccaatatggttagttttgtccataaatatcacacttgcatatttaattcaacacacacaattaatcaatcaaaatc |
37795730 |
T |
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| Q |
117 |
aaactattttgcaaatttgtaatttatctttatgttttacttatgcattatttaatttcacaaatttcttaatttacactttggaggagttaa-aaaact |
215 |
Q |
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| T |
37795729 |
aaactattttgcaaatttgtaatttatatttatgttttacttatgcattatttaattttacaaatttcttaatttacactttggaggagttaaaaaaact |
37795630 |
T |
|
| Q |
216 |
cataactaaaggacataggtttctccgagaactaacatcttttgtgaaaaatgagaactatccatatcaatcattagatttaactaacgcccacgattta |
315 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37795629 |
cataactaaaggacataggttttgctgagaactaacatcttttgtgagaaacgagaactatccatatcaatcattagatttaactaacgcccacgaatta |
37795530 |
T |
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| Q |
316 |
attatttgtttaaaacctcctgtggccctttgct |
349 |
Q |
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|||||||||||||||| || |||||||| |||| |
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| T |
37795529 |
attatttgtttaaaacttctcgtggccctgtgct |
37795496 |
T |
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