View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10767_low_1 (Length: 621)
Name: NF10767_low_1
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 31 - 610
Target Start/End: Complemental strand, 7375862 - 7375259
Alignment:
| Q |
31 |
gttactttgctgttggctgaattttatgatccatcacttgtcaagagagtttggaagccactttcattgaagttagttacattgatcacaataaacacat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7375862 |
gttactttgctgttggctgaattttatgatccatcacttgtcaagagaatttggaagccactttctttgaagttagttacattgatcacaataaacacat |
7375763 |
T |
|
| Q |
131 |
gattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcct |
227 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7375762 |
gattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcct |
7375663 |
T |
|
| Q |
228 |
cctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttca |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
7375662 |
cctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctca |
7375563 |
T |
|
| Q |
328 |
ttcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ |
421 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7375562 |
ttcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataac |
7375463 |
T |
|
| Q |
422 |
ccttaacctcctcaaatccattt---------------tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctc |
506 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
7375462 |
aattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctc |
7375363 |
T |
|
| Q |
507 |
ttccttctcttctacctccatcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7375362 |
ttccttctcttctacctccatcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
|
| Q |
607 |
ctat |
610 |
Q |
| |
|
|||| |
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|
| T |
7375262 |
ctat |
7375259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 85 - 610
Target Start/End: Original strand, 7278029 - 7278580
Alignment:
| Q |
85 |
aagccactttcattgaagttagttacattgat--cacaataaacacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7278029 |
aagccactttcattgaagttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaa |
7278128 |
T |
|
| Q |
180 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7278129 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagc |
7278228 |
T |
|
| Q |
280 |
tgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctcca |
379 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
7278229 |
tgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctcca |
7278328 |
T |
|
| Q |
380 |
tcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
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|
| T |
7278329 |
tcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatc |
7278428 |
T |
|
| Q |
459 |
cacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgctctcctcattc |
558 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7278429 |
tacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgttctcctcattc |
7278528 |
T |
|
| Q |
559 |
cccaaagcttcaaatttttcacctccctcattctcctccttacaccccctat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278529 |
cccaaagcttcaaatttttcacctccctcattctcctccttacaccccctat |
7278580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 606
Target Start/End: Original strand, 7278793 - 7278849
Alignment:
| Q |
550 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
606 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
|
|
| T |
7278793 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
7278849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 606
Target Start/End: Complemental strand, 7375046 - 7374990
Alignment:
| Q |
550 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
606 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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|
| T |
7375046 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
7374990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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