View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_low_12 (Length: 340)
Name: NF10767_low_12
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 41548489 - 41548168
Alignment:
| Q |
1 |
aagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatga |
100 |
Q |
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| T |
41548489 |
aagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttacagatggaaacttatga |
41548390 |
T |
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| Q |
101 |
aagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatg |
200 |
Q |
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| T |
41548389 |
aagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagacaacaacttcaaatg |
41548290 |
T |
|
| Q |
201 |
gagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttga |
300 |
Q |
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| T |
41548289 |
gagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttga |
41548190 |
T |
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| Q |
301 |
aggaagccaagacggctgaaaa |
322 |
Q |
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| T |
41548189 |
aggaagccaagacggctgaaaa |
41548168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 41509743 - 41509652
Alignment:
| Q |
196 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
287 |
Q |
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| T |
41509743 |
aaatggagaaacttgcaaggataaaggctgaggaagagttaaagaaaagagaggaaatttttcagaaagggaagaaagtacaagaacgttat |
41509652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 41519969 - 41519878
Alignment:
| Q |
196 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
287 |
Q |
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| T |
41519969 |
aaatggagaaacttgcaaggatacaggccgaggaagagtttaagaaaagagaggaactttgtcagaaagggaagaaagtacaagaacgttat |
41519878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 41515732 - 41515637
Alignment:
| Q |
192 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
287 |
Q |
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| T |
41515732 |
cttcaactggagaaactctcaaggttgtacgctgagtctgagtttaagaaaagagaagagatttgtgagaaagggaagaaagttcaagaaagttat |
41515637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 41524655 - 41524548
Alignment:
| Q |
199 |
tggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctctt |
298 |
Q |
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|||||||||||||||||||| | |||||| ||||| ||||||||||| || |||||| | ||| ||||||||| |||||||||||| | ||||| || |
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| T |
41524655 |
tggagaaactctcaaggttatatgctgagtctgagtttaagaaaagagaagagatttgtgaaaaagggaagaaagttcaagaaagttatgaagctctttt |
41524556 |
T |
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| Q |
299 |
gaaggaag |
306 |
Q |
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||| |||| |
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| T |
41524555 |
gaaagaag |
41524548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 41469970 - 41469895
Alignment:
| Q |
231 |
gagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaag |
306 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||| | ||||| ||||| |||| |
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| T |
41469970 |
gagtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaag |
41469895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 41509849 - 41509765
Alignment:
| Q |
102 |
agagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagac |
186 |
Q |
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||||||||||||||||||||||| || ||| | | ||||| |||||| | ||||| ||| || |||||||||| ||||| |||| |
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| T |
41509849 |
agagttgaaggtgttttggtgagtagagatgttggactcagagaccaaactcaacgcttgcagcagaatgttgatatggagagac |
41509765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 16638334 - 16638393
Alignment:
| Q |
192 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
251 |
Q |
| |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
16638334 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
16638393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17457304 - 17457245
Alignment:
| Q |
192 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
251 |
Q |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
17457304 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17457245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 17595910 - 17595969
Alignment:
| Q |
192 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
251 |
Q |
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||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||| |
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| T |
17595910 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17595969 |
T |
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