View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_low_13 (Length: 332)
Name: NF10767_low_13
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 47315853 - 47315676
Alignment:
| Q |
139 |
caaagacactaaaactgtttttatcactactcaatttttcatatgaaattcactagtcattcattactccagctaaaaggctttatatatacatccttta |
238 |
Q |
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| T |
47315853 |
caaagacactaaaactgtttttatcactactcaatttttcatatgaaattcactagtcattcattactccagctaaaaggctttatatatacatccttta |
47315754 |
T |
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| Q |
239 |
tccacaaaccaaaatcagttacaacagcataacaaccaaaactgatcgtaactcactttccaactagaatgttgagtg |
316 |
Q |
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| T |
47315753 |
tccacaaaccaaaatcagttacaacagcataacaaccaaaactgatcgtaactcactttccaactagaatgttgagtg |
47315676 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 47315916 - 47315851
Alignment:
| Q |
25 |
aagaaagaaattgcaagagaagaaagtgagcacaagaaaattggttaccttgcttagagttttcaa |
90 |
Q |
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| T |
47315916 |
aagaaagaaattccaagagaagaaagtgagcacaagaaaattggttaccttgctcagagttttcaa |
47315851 |
T |
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