View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10767_low_17 (Length: 251)
Name: NF10767_low_17
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_17 |
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| [»] scaffold0570 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0570 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 6761 - 6521
Alignment:
| Q |
11 |
cagagatgtactgtagtaggaatacacctacggattgcaaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6761 |
cagagatgtactgtagtaggaatacacctacggattgccaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
6662 |
T |
|
| Q |
111 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
6661 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaattcatggagtagtcggtgtctctcg |
6562 |
T |
|
| Q |
211 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6561 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
6521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 36482685 - 36482445
Alignment:
| Q |
11 |
cagagatgtactgtagtaggaatacacctacggattgcaaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36482685 |
cagagatgtactgtagtaggaatacacctacggattgccaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
36482586 |
T |
|
| Q |
111 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36482585 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaattcatggagtagtcggtgtctctcg |
36482486 |
T |
|
| Q |
211 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36482485 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
36482445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 17779626 - 17779546
Alignment:
| Q |
118 |
tctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagt |
198 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||| |||| ||| |||||||||||||||| || || ||||||||| |
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|
| T |
17779626 |
tctatgattggtagaagtaagaaagcaactttcgggtttattaaagatagaatttggaaaaagattaattcctggagtagt |
17779546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 328433 - 328673
Alignment:
| Q |
11 |
cagagatgtactgtagtaggaatacacctacggattgcaaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
110 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||| || |||||||| ||||| ||||||||||||| |||||||| |
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| T |
328433 |
cagagatgtactgtagcaggaacacacctacggattgccaggagagattagcatcaattcttggggtcaagcaggtattaggcacaggcaagtatctagg |
328532 |
T |
|
| Q |
111 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcg |
210 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |
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|
| T |
328533 |
actcccatctatgattgggaggagtaaaaaagcgactttgaagtttgttaaggatcgaatttggaacaggatcaactcatggagtagccggtgtctctcg |
328632 |
T |
|
| Q |
211 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
328633 |
caagcagggcgagaaattcttattaaatctgtccttcaatc |
328673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 13999013 - 13998856
Alignment:
| Q |
94 |
acaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgga |
193 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||| || | || || || |||||||| || || ||||| || |||||||||||||| | ||| || || |||| |
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| T |
13999013 |
acaggaaaatacctaggcctcccatcaatggttagaagaagcaaaaaagcgacctttaaatttgtgaaagatcgaatttggaataggataaattcttgga |
13998914 |
T |
|
| Q |
194 |
gtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
|||| ||| | ||||||||||| ||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
13998913 |
gtagcatatgtttgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatc |
13998856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 15608703 - 15608756
Alignment:
| Q |
145 |
actttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagt |
198 |
Q |
| |
|
|||||||| ||| |||| ||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
15608703 |
actttcaactttattaaagatagaatttggaagaagataaactcatggagtagt |
15608756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 35221970 - 35221893
Alignment:
| Q |
115 |
ccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgg |
192 |
Q |
| |
|
||||||||||| || ||||| || |||||||| || || ||| | |||||||| |||||||||| |||||| |||||| |
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|
| T |
35221970 |
ccatctatgatcggaaggagcaaaaaagcgacgtttaattttatcaaggatcgtatttggaaaaggatcaattcatgg |
35221893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 14584081 - 14584321
Alignment:
| Q |
11 |
cagagatgtactgtagtaggaatacacctacggattgcaaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
110 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||| ||||| | |||| ||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
14584081 |
cagagatgtattgtagtagaaatacacctttggattgtcaggagcgcaaagcaacaatacttagggtcaaacaggtattaggcacaggaaagtatctagg |
14584180 |
T |
|
| Q |
111 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcg |
210 |
Q |
| |
|
||| |||||||||||||| ||||| || ||| ||||||| |||||||||||||||| || ||||| | ||| || |||||||||| | ||||| ||| |
|
|
| T |
14584181 |
acttccatctatgattggcaggagcaacaaaacgacttttaagtttgttaaggatcatatatggaacatgattaattcatggagtaccagatgtctttcg |
14584280 |
T |
|
| Q |
211 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
||| || | || |||||||| |||||||| ||||| ||||| |
|
|
| T |
14584281 |
caaacaagaagggaaattcttatcaaatcagtcctgcaatc |
14584321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 35320665 - 35320822
Alignment:
| Q |
94 |
acaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgga |
193 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||| |||| || || || |||||||| || || ||||| || |||||||||||||| | ||| || || |||| |
|
|
| T |
35320665 |
acaggaaaatacctaggtctcccatcaatggttggaagaagcaaaaaagcgacctttaaatttgtgaaagatcgaatttggaataggataaattcttgga |
35320764 |
T |
|
| Q |
194 |
gtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
|||| | ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
35320765 |
gtagcagatgtctgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatc |
35320822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 45276089 - 45275932
Alignment:
| Q |
94 |
acaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgga |
193 |
Q |
| |
|
||||| || ||||| || || ||||| ||||| || ||||| || ||||| || ||||| |||||||| ||||| || ||||| | || ||||| |||| |
|
|
| T |
45276089 |
acaggaaagtatctcggtcttccatcaatgataggaaggagcaaaaaagcaaccttcaaatttgttaaagatcggatctggaatagaattaactcttgga |
45275990 |
T |
|
| Q |
194 |
gtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
| || ||||| | |||||||||||||| || ||||| ||||||||||| || ||||| |
|
|
| T |
45275989 |
gcagcaggtgtttatcgcaagcagggagggagattcttatcaaatctgtactgcaatc |
45275932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 16937761 - 16937521
Alignment:
| Q |
11 |
cagagatgtactgtagtaggaatacacctacggattgcaaggagagattagcagcaatactcggggtcaaacaggtgctaggcacaggcaaatatctagg |
110 |
Q |
| |
|
|||||||||| || ||||| ||||||||| ||||| ||||| | ||||| |||| || |||||||||||||| ||||||| || || ||| |||| |
|
|
| T |
16937761 |
cagagatgtattgcagtagaaatacacctttcgattgtcaggagcgcatagcaacaattcttggggtcaaacaggtattaggcacgggaaagtatttagg |
16937662 |
T |
|
| Q |
111 |
actcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcg |
210 |
Q |
| |
|
||| ||| | |||||||| || || || ||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||| | ||||| || |
|
|
| T |
16937661 |
acttccaccaatgattggcagaagcaaaaaagcgacttttaagtttgtcaaggatcgtatatggaacaagatcaattcatggagtagcagatgtctttca |
16937562 |
T |
|
| Q |
211 |
caagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
|| ||||| || |||||||| |||||||| ||||| ||||| |
|
|
| T |
16937561 |
caggcaggaagggaaattcttatcaaatcagtcctgcaatc |
16937521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 30470485 - 30470328
Alignment:
| Q |
94 |
acaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgga |
193 |
Q |
| |
|
||||| || ||||| || || ||||| ||||| || ||||| || ||||| || ||||| |||||||| ||||| || ||||| | || ||||| |||| |
|
|
| T |
30470485 |
acaggaaagtatctcggtcttccatcaatgataggaaggagcaaaaaagcaaccttcaaatttgttaaagatcggatctggaatagaattaactcttgga |
30470386 |
T |
|
| Q |
194 |
gtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
| || ||||| | |||||||||||||| || ||||| ||||||||||| || ||||| |
|
|
| T |
30470385 |
gcagcaggtgtttatcgcaagcagggagggagattcttatcaaatctgtactgcaatc |
30470328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 25735848 - 25735927
Alignment:
| Q |
97 |
ggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaa |
176 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| | ||| ||||||||||| |||||||||||||| || | ||||||||| |
|
|
| T |
25735848 |
ggcaagtatcttggtcttccatcaatgattgggatgagcaagaaagcgacattcaagtttgttaaagaccaaatttggaa |
25735927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 33306779 - 33306622
Alignment:
| Q |
94 |
acaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatgga |
193 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||| |||| || || || |||||||| || || ||||| || |||||||||||||| | ||| || || |||| |
|
|
| T |
33306779 |
acaggaaaatacctaggcctcccatcaatggttggaagaagcaaaaaagcgacctttaaatttgtgaaagatcgaatttggaataggataaattcttgga |
33306680 |
T |
|
| Q |
194 |
gtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
|||| | ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
33306679 |
gtagcagatgtctgtcgcaagcaggaagagagattcttatcaaatcagtcctccaatc |
33306622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 20723719 - 20723629
Alignment:
| Q |
149 |
tcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtcggtgtctctcgcaagcagggagagaaattctgatcaaatc |
239 |
Q |
| |
|
|||||||| | ||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||| | |||||| || |||| ||||| |
|
|
| T |
20723719 |
tcaagtttataaaggatcatatttggaataaaatcaattcatggagtagtcggtgtctatcgcaagcaagcagagaagttttgataaaatc |
20723629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 26368790 - 26368870
Alignment:
| Q |
118 |
tctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagt |
198 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||| |||| || |||||||||||||||| || || ||||||||| |
|
|
| T |
26368790 |
tctatgattggtagaagtaagaaagcaactttcgagtttattaaagacagaatttggaaaaagattaattcctggagtagt |
26368870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 27255291 - 27255442
Alignment:
| Q |
100 |
aaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtc |
199 |
Q |
| |
|
|||||| | ||||| || || ||||||||||| |||||||||| ||| || |||| | |||||||| || || || || || ||||| |||||||| |
|
|
| T |
27255291 |
aaatatttgggacttccttccatgattggtagaagtaagaaagtgacctttcagttcataaaggatcgcatctgaaacaaaattaactcgtggagtagca |
27255390 |
T |
|
| Q |
200 |
ggtgtctctcgcaagcagggagagaaattctgatcaaatctgtccttcaatc |
251 |
Q |
| |
|
| |||||||| |||||| |||| |||||||| || ||||| ||||||||||| |
|
|
| T |
27255391 |
gatgtctctcacaagcaaggagggaaattctcataaaatcagtccttcaatc |
27255442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 204942 - 204828
Alignment:
| Q |
84 |
ggtgctaggcacaggcaaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatc |
183 |
Q |
| |
|
||||||||| | ||| |||||||| || | || |||||||||||| | || |||||||| ||||| | ||| | |||||| || |||||||||||||| |
|
|
| T |
204942 |
ggtgctaggtataggtaaatatcttgggttaccttctatgattggtcgaagcaagaaagctacttttacttttatcaaggatagagtttggaaaaagatc |
204843 |
T |
|
| Q |
184 |
aactcatggagtagt |
198 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
204842 |
aattcgtggagtagt |
204828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 32284611 - 32284499
Alignment:
| Q |
100 |
aaatatctaggactcccatctatgattggtaggagtaagaaagcgactttcaagtttgttaaggatcgaatttggaaaaagatcaactcatggagtagtc |
199 |
Q |
| |
|
|||||||| || || |||||||||||||| | ||||| | || ||||| || ||| |||||||||| || ||||| || |||||||| || |||||| |
|
|
| T |
32284611 |
aaatatcttgggctaccatctatgattggacgtagtaaacatgcaacttttaaatttattaaggatcgtatatggaataaaatcaactcctgaagtagta |
32284512 |
T |
|
| Q |
200 |
ggtgtctctcgca |
212 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
32284511 |
gatgtctctcgca |
32284499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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