View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10767_low_24 (Length: 237)

Name: NF10767_low_24
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10767_low_24
NF10767_low_24
[»] scaffold0570 (1 HSPs)
scaffold0570 (1-224)||(6293-6516)
[»] chr4 (2 HSPs)
chr4 (1-224)||(36482217-36482440)
chr4 (124-219)||(33038519-33038614)
[»] chr6 (3 HSPs)
chr6 (1-224)||(328678-328901)
chr6 (7-206)||(13998646-13998845)
chr6 (52-224)||(32955938-32956110)
[»] chr1 (3 HSPs)
chr1 (1-224)||(14584326-14584549)
chr1 (29-222)||(45275706-45275899)
chr1 (7-218)||(35320833-35321044)
[»] chr3 (3 HSPs)
chr3 (28-224)||(16937293-16937489)
chr3 (29-222)||(30470102-30470295)
chr3 (7-218)||(25736013-25736224)
[»] chr5 (2 HSPs)
chr5 (7-218)||(33306400-33306611)
chr5 (25-219)||(20862512-20862706)
[»] scaffold0016 (1 HSPs)
scaffold0016 (4-131)||(185592-185719)
[»] chr2 (1 HSPs)
chr2 (151-222)||(12995898-12995969)


Alignment Details
Target: scaffold0570 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6516 - 6293
Alignment:
Q  1 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6516 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttggtggggtcataattctaccaatt 6417  T
Q  101 cacgaggcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  6416 cacgaggcttacattggttatcatgggagcgtctctctgtccctaagatctttggaggaatgggcttcaagaacctccgagccttcaatttggcaatgat 6317  T
Q  201 tggaaagcaagcatggaagttggt 224  Q
     |||||||||||||||||||||||    
T  6316 cggaaagcaagcatggaagttggt 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36482440 - 36482217
Alignment:
Q  1 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36482440 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttggtggggtcataattctaccaatt 36482341  T
Q  101 cacgaggcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  36482340 cacgaggcttacattggttatcatgggagcgtctctctgtccctaagatctttggaggaatgggcttcaagaacctccgagccttcaatttggcaatgat 36482241  T
Q  201 tggaaagcaagcatggaagttggt 224  Q
     |||||||||||||||||||||||    
T  36482240 cggaaagcaagcatggaagttggt 36482217  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 33038614 - 33038519
Alignment:
Q  124 tgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaag 219  Q
    ||||| |||||||||||  ||||||  |||||||||||| | |||||||   || |||| || |||||||| ||||||||||||||  ||||||||    
T  33038614 tgggaacgtctctctgttcctaagacatttggaggaatgagattcaagagtatcagagcttttaatttggccatgattggaaagcagccatggaag 33038519  T

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Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 328678 - 328901
Alignment:
Q  1 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaatt 100  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  328678 ccctcctatgtgatgagcgttttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgctttttggtggggtcataattctaccaatt 328777  T
Q  101 cacgaggcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgat 200  Q
    || |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||  || | ||| ||||| ||||| |||||    
T  328778 caagaggattacattggttatcatgggagcgtctctttgtccctaagatctttggaggaatgggttttaagagtcttcaagctttcaacttggcgatgat 328877  T
Q  201 tggaaagcaagcatggaagttggt 224  Q
     |||||||||||||||||||||||    
T  328878 cggaaagcaagcatggaagttggt 328901  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 13998845 - 13998646
Alignment:
Q  7 tatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgag 106  Q
    ||||| |||||| |||||||| | || || ||||| ||||| ||||| || |||||||| ||| | || || ||||| || ||||| | ||| |||  ||    
T  13998845 tatgttatgagtgttttcttactgccaggtacttttattagtgaaattgaaaaaatgctaaatacattatggtggggacacaattcgaacaactcaaaag 13998746  T
Q  107 gcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaa 206  Q
    |||| |||||| | || ||||| |||||||| ||  ||||  ||||||||||||||||||||||||  || ||||| |||||||| || |||||||||||    
T  13998745 gcttgcattggatgtcctgggaacgtctctcagttcctaaagtctttggaggaatgggtttcaagagtcttcgagctttcaatttagccatgattggaaa 13998646  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 32955938 - 32956110
Alignment:
Q  52 atagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgaggcttacattggttatcatgggagcgtctctctgtctctaagatct 151  Q
    ||||| |||||| | ||| |||| || |||||||||||||| || || || ||||| ||||| ||| |||| ||||||||||| || ||  | ||| | |    
T  32955938 atagaaaaaatgttaaattccttctggtggggtcataattcaacaaactctcgaggattacactggctatcttgggagcgtctttcagttccaaaggtat 32956037  T
Q  152 ttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaagttggt 224  Q
    ||||||| |||||  | |||  ||||  |||||| ||| |||||||| |||| ||||| || |||||||||||    
T  32956038 ttggaggtatgggagttaagggcctcaaagcctttaatatggctatggttggtaagcaggcttggaagttggt 32956110  T

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Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14584326 - 14584549
Alignment:
Q  1 ccctcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaatt 100  Q
    ||||| ||||| |||||  | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| || |    
T  14584326 ccctcatatgtaatgagcgtgttcttattaccaggcactttcatcagcgaaatagagaaaatgcttaatgccttttggtggggacataactctactaact 14584425  T
Q  101 cacgaggcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgat 200  Q
    |   ||  ||||| |||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||  ||  |||| |||||||||||||||||    
T  14584426 ctaaagttttacactggttatcatgggaacatctctctgtccctaagatctttggaggtatgggtttcaagagtcttagagctttcaatttggctatgat 14584525  T
Q  201 tggaaagcaagcatggaagttggt 224  Q
     |||||||| ||||||||| ||||    
T  14584526 cggaaagcaggcatggaagatggt 14584549  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 45275899 - 45275706
Alignment:
Q  29 taccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgaggcttacattggttatcatggga 128  Q
    ||||| ||||||||||| | ||||| ||||| |||||||| ||||| || |||||||| || ||| | |||||||||||| | ||||||||||| |||||    
T  45275899 taccgagcactttcattggtgaaattgagaagatgcttaacgccttctggtggggtcacaactctgcaaattcacgaggcatgcattggttatcttggga 45275800  T
Q  129 gcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaagttg 222  Q
     || ||||||||  |||| |  |||||||| ||||||||||| |  |||||||| || |||||||| ||||| |||||||| || |||||||||    
T  45275799 acgcctctctgttcctaaaacttttggaggtatgggtttcaaaagtctccgagcttttaatttggccatgatcggaaagcaggcctggaagttg 45275706  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 35320833 - 35321044
Alignment:
Q  7 tatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgag 106  Q
    ||||| |||||| |||||||| | || || ||||| ||||| ||||| || |||||||| ||| | || || ||||| || ||||| | ||| |||  ||    
T  35320833 tatgttatgagtgttttcttactgccaggtacttttattagtgaaattgaaaaaatgctaaatacattctggtggggacacaattcgaacaactcaaaag 35320932  T
Q  107 gcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaa 206  Q
    |||| |||||| | || ||||| |||||||| ||  ||||  |||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  35320933 gcttgcattggatgtcctgggaacgtctctcagttcctaaagtctttggaggaatgggtttcaagagccttcgagctttcaatttggccatgattggaaa 35321032  T
Q  207 gcaagcatggaa 218  Q
     ||||| |||||    
T  35321033 acaagcttggaa 35321044  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 16937489 - 16937293
Alignment:
Q  28 ttaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgaggcttacattggttatcatggg 127  Q
    ||||| || |||||||| | |||||||||||||||||||||||||||||| ||||| ||||| ||  | || ||   ||| ||||| |||||||||||||    
T  16937489 ttaccaggtactttcatcaacgaaatagagaaaatgcttaatgccttttggtggggacataactcccctaactctaaaggtttacactggttatcatggg 16937390  T
Q  128 agcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaagttggt 224  Q
    | |||||||||||| |||||| ||||||||| |||||||||||||  ||  |||| ||||||||||||||||| ||||| ||  |||||||| ||||    
T  16937389 aacgtctctctgtccctaagagctttggaggtatgggtttcaagagtcttagagctttcaatttggctatgatcggaaaacagacatggaagatggt 16937293  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 30470295 - 30470102
Alignment:
Q  29 taccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgaggcttacattggttatcatggga 128  Q
    ||||| ||||||||||| | ||||| ||||| |||||||| ||||| || |||||||| || ||| | |||||||||||| | ||||||||||| |||||    
T  30470295 taccgagcactttcattggtgaaattgagaagatgcttaacgccttctggtggggtcacaactctgcaaattcacgaggcatgcattggttatcttggga 30470196  T
Q  129 gcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaagttg 222  Q
     || ||||||||  |||| |  |||||||| ||||||||||| |  |||||||| || |||||||| ||||| |||||||| || |||||||||    
T  30470195 acgcctctctgttcctaaaacttttggaggtatgggtttcaaaagtctccgagcttttaatttggccatgatcggaaagcaggcctggaagttg 30470102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 25736013 - 25736224
Alignment:
Q  7 tatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgag 106  Q
    |||||||||||||| |||||| |  | ||||| |||||||| ||||| ||||| ||||||||  | || || ||||  || || ||||| |  ||||| |    
T  25736013 tatgtgatgagtatattcttactgtcaggcaccttcattagtgaaattgagaagatgcttaacactttctggtgggcacacaactctacaacatcacgtg 25736112  T
Q  107 gcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaa 206  Q
    |  |||| |||||||| ||| ||||||| |||||  || |||  ||||||||||||||||||||||||||  | ||||| ||||||| ||||||||| ||    
T  25736113 gtatacactggttatcttggtagcgtctatctgttcctgagacttttggaggaatgggtttcaagaaccttagggcctttaatttgggtatgattgggaa 25736212  T
Q  207 gcaagcatggaa 218  Q
    |||  |||||||    
T  25736213 gcagacatggaa 25736224  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 33306611 - 33306400
Alignment:
Q  7 tatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgag 106  Q
    ||||| |||||| |||||||| | || || ||||| ||||| ||||| || |||||||| ||| | || || ||||| || ||||| | ||| |||  ||    
T  33306611 tatgttatgagtgttttcttactgccaggtacttttattagtgaaattgaaaaaatgctaaatacattctggtggggacacaattcgaacaactcaaaag 33306512  T
Q  107 gcttacattggttatcatgggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaa 206  Q
    |||| |||||| | || |||||  ||||||| ||  ||||  |||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||    
T  33306511 gcttgcattggatgtcctgggaatgtctctcagttcctaaagtctttggaggaatgggtttcaagagccttcgagctttcaatttggccatgattggaaa 33306412  T
Q  207 gcaagcatggaa 218  Q
     ||||| |||||    
T  33306411 acaagcttggaa 33306400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 20862512 - 20862706
Alignment:
Q  25 ttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcacgaggcttacattggttatcat 124  Q
    ||||| || |||||||||||||| |||||  | || |||||||| |  || || ||||| || || ||||| | |||||| ||| | |||| ||||||||    
T  20862512 ttattccctggcactttcattagtgaaatttaaaagatgcttaacgtgttctggtggggacacaactctacaatttcacgtggcatgcatttgttatcat 20862611  T
Q  125 gggagcgtctctctgtctctaagatctttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaag 219  Q
    |||| ||||| |||||  | ||||  |||||||||||||||||||||| |||  | |  ||| ||||||| |||||||| ||||| |||||||||    
T  20862612 gggaacgtctatctgttccaaagacttttggaggaatgggtttcaagatcctttgggatttctatttggccatgattgggaagcaggcatggaag 20862706  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 185592 - 185719
Alignment:
Q  4 tcctatgtgatgagtattttcttattaccgggcactttcattagcgaaatagagaaaatgcttaatgccttttgatggggtcataattctaccaattcac 103  Q
    ||||||||||||||||||||| |  | |||||  |  ||||||  || ||||| |||||| | ||| ||||||| ||||||||||||||  | ||||| |    
T  185592 tcctatgtgatgagtattttccttcttccgggatccctcattaatgagatagaaaaaatgttaaattccttttggtggggtcataattcagcaaattctc 185691  T
Q  104 gaggcttacattggttatcatgggagcg 131  Q
    |||| ||||||||| |||| ||||||||    
T  185692 gaggattacattggctatcttgggagcg 185719  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 12995898 - 12995969
Alignment:
Q  151 tttggaggaatgggtttcaagaacctccgagccttcaatttggctatgattggaaagcaagcatggaagttg 222  Q
    |||||||| ||||||||||| |  |||||||| || |||||||| ||||| |||||||| || |||||||||    
T  12995898 tttggaggtatgggtttcaaaagtctccgagcttttaatttggccatgatcggaaagcaggcctggaagttg 12995969  T

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