View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10767_low_26 (Length: 236)
Name: NF10767_low_26
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46864905 - 46865126
Alignment:
| Q |
1 |
tcatgattttcttctctctcattcataaagatgcacacttgtgatattgtggtcggctaatgtcattagcactctaatgtcaccgaatttctattcaaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
46864905 |
tcatgactttcttctctctcattcataaagatgcacacttgtgacattatgatcggctaatgtcattagcactccaatgtcaccgaattgctatccaaaa |
46865004 |
T |
|
| Q |
101 |
tatgttactttgtgcatgtggaacgcacttttgggttcagatagcgaagtgttgggttggatacattgaaattcaacacgtgccttctcccccattttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46865005 |
tatgtta-tttgtgcatgtggaacgcacttttgggttcagatagcgaagtgttgggttggatacattgaaattcaacacgtgccttctcccccattttgt |
46865103 |
T |
|
| Q |
201 |
tggccctaataataagtaacaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46865104 |
tggccctaataataagtaacaag |
46865126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University