View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_low_27 (Length: 233)
Name: NF10767_low_27
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 32679899 - 32679702
Alignment:
| Q |
13 |
caaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctattttt |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679899 |
caaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctattttt |
32679800 |
T |
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| Q |
113 |
gcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32679799 |
gcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggttttcatccttt |
32679702 |
T |
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Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 28136218 - 28136025
Alignment:
| Q |
13 |
caaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctattttt |
112 |
Q |
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||||||||||| || |||||||| |||| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||| |
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| T |
28136218 |
caaaggcaacttgccgcactactcgtatccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttt |
28136119 |
T |
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| Q |
113 |
-gcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
28136118 |
tgcatatatggagtctctttcttcatgtagct-----gttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 44806627 - 44806795
Alignment:
| Q |
13 |
caaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctattttt |
112 |
Q |
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||||||||||| || ||| ||||||||| |||||| | || ||| |||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |
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| T |
44806627 |
caaaggcaacttgccgcattacttgtatcaaaggtagtgta-ttctgctcattatttgaattgtcacatgttctattgataactgtgcgatgctgttttt |
44806725 |
T |
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| Q |
113 |
gcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataac |
182 |
Q |
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||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44806726 |
gcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgatatttgagataac |
44806795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 2230444 - 2230585
Alignment:
| Q |
69 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
168 |
Q |
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|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
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| Q |
169 |
atatttgagataacaaacaagtattgttggttttcatccttt |
210 |
Q |
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|||||||||||| |||| || |||| | || |||||||||| |
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| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt |
2230585 |
T |
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