View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_low_3 (Length: 438)
Name: NF10767_low_3
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 27324651 - 27324849
Alignment:
| Q |
13 |
agatgaagcttcaatttgagtttagcttttgagttaaaacatgcattgataaatgtgggtaaacgtgagtctccgagtgtaaacgaacggtagaccaaac |
112 |
Q |
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| T |
27324651 |
agatgaaacttcaatttgagtttagcttttgagttaaaacatgcattgagaaatgtgggtaatcgtgagtctccgagtgtaaacgaacggtagaccaaac |
27324750 |
T |
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| Q |
113 |
atatactaattaatagtgaattattgattgacatgtgtacaaatccgctatgaaaaagggatatttcgatttttatcattaagttaagaataattaaat |
211 |
Q |
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| T |
27324751 |
acatactaattaatagtgaattattgattgacatgtgtacaaatccgctatgaaaaagggatatttcgatttttatcattaagttaagaataattaaat |
27324849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 291 - 423
Target Start/End: Original strand, 27326634 - 27326768
Alignment:
| Q |
291 |
gacaaacgtaaactcaacttgtttcattaataagatta--catcaatacaaataggagaaaaattaaaatattggtgactaacctaagaaatgtcccact |
388 |
Q |
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| T |
27326634 |
gacaaaggtaaactcaacttgtttcattaataagattatacatcaatacaaataggagaaaaattgaaatattggtgactaacctaagaaatgtcccact |
27326733 |
T |
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| Q |
389 |
tgctaaccatttttgtatggcatattccttccaat |
423 |
Q |
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| T |
27326734 |
tgctaaccatttttgtatggcatattccttccaat |
27326768 |
T |
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