View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10767_low_30 (Length: 224)

Name: NF10767_low_30
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10767_low_30
NF10767_low_30
[»] chr4 (15 HSPs)
chr4 (2-224)||(47968694-47968908)
chr4 (2-112)||(41279636-41279747)
chr4 (2-112)||(54976234-54976345)
chr4 (2-112)||(55874049-55874160)
chr4 (2-110)||(6884561-6884670)
chr4 (2-112)||(37564269-37564380)
chr4 (26-112)||(22443262-22443348)
chr4 (27-112)||(29119383-29119470)
chr4 (2-112)||(29191501-29191612)
chr4 (26-112)||(49283618-49283705)
chr4 (26-112)||(1921716-1921803)
chr4 (2-112)||(38024052-38024163)
chr4 (26-112)||(42739094-42739180)
chr4 (43-112)||(8067423-8067492)
chr4 (43-112)||(47498136-47498205)
[»] chr7 (7 HSPs)
chr7 (2-112)||(42027443-42027554)
chr7 (2-112)||(29008149-29008260)
chr7 (27-112)||(12313377-12313463)
chr7 (26-112)||(44118574-44118661)
chr7 (26-112)||(33119210-33119296)
chr7 (43-112)||(1828489-1828558)
chr7 (28-76)||(47646009-47646058)
[»] chr6 (3 HSPs)
chr6 (2-112)||(20219529-20219640)
chr6 (2-112)||(22113554-22113665)
chr6 (26-112)||(11455693-11455780)
[»] chr1 (13 HSPs)
chr1 (2-112)||(44565560-44565671)
chr1 (2-112)||(42887160-42887271)
chr1 (5-112)||(17307066-17307174)
chr1 (2-112)||(261198-261309)
chr1 (2-112)||(2326301-2326412)
chr1 (2-112)||(46833700-46833811)
chr1 (26-112)||(15545037-15545124)
chr1 (26-112)||(21373441-21373527)
chr1 (2-112)||(49622367-49622476)
chr1 (26-112)||(33506239-33506326)
chr1 (2-112)||(51621337-51621447)
chr1 (26-112)||(37661435-37661521)
chr1 (8-112)||(29743950-29744055)
[»] chr8 (8 HSPs)
chr8 (2-110)||(6610253-6610362)
chr8 (26-112)||(40978120-40978206)
chr8 (26-112)||(2956516-2956603)
chr8 (29-112)||(21594708-21594792)
chr8 (9-112)||(43634169-43634272)
chr8 (26-112)||(36557617-36557704)
chr8 (26-112)||(43048459-43048545)
chr8 (43-112)||(27424047-27424116)
[»] scaffold0735 (1 HSPs)
scaffold0735 (2-112)||(113-224)
[»] chr5 (8 HSPs)
chr5 (2-112)||(35384667-35384778)
chr5 (2-112)||(16617882-16617993)
chr5 (2-112)||(30404243-30404354)
chr5 (32-112)||(18672894-18672975)
chr5 (26-112)||(10329235-10329322)
chr5 (26-112)||(2956109-2956195)
chr5 (26-112)||(37276511-37276598)
chr5 (43-112)||(1751895-1751964)
[»] chr2 (8 HSPs)
chr2 (2-112)||(7758715-7758825)
chr2 (2-112)||(35734064-35734175)
chr2 (2-112)||(28809217-28809328)
chr2 (2-112)||(10356162-10356273)
chr2 (26-112)||(34209879-34209966)
chr2 (26-112)||(43589342-43589429)
chr2 (26-112)||(16256724-16256811)
chr2 (31-112)||(16255910-16255992)
[»] scaffold1251 (1 HSPs)
scaffold1251 (26-112)||(117-204)
[»] chr3 (1 HSPs)
chr3 (26-112)||(46484985-46485071)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 47968694 - 47968908
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaacatt-aaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  47968694 atgttacaaaaaagaggataatgtgcaatatgttaaaaacatttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattat-- 47968791  T
Q  101 caatgtaattaattgagtgtgcctataatgaaatttacaaatgatatctataaacaaattag-ttatgactcatcattgtaatagatggattaatttatt 199  Q
             |||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47968792 ---------taattgagcgtgcgtataatgaaatttacaaatgatatttataaacaaattagtttatgactcatcattgtaatagatggattaatttatt 47968882  T
Q  200 ctgaattt-aaaatgttataaataat 224  Q
    || ||||| |||||||||||||||||    
T  47968883 ctcaatttaaaaatgttataaataat 47968908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 41279636 - 41279747
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||||| ||||  |||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| || |||||| || |    
T  41279636 atgttacaaaaaagaggttaataagcaatatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataataatgt 41279735  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  41279736 caatgtaattaa 41279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 54976234 - 54976345
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  54976234 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 54976333  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  54976334 caatgtaattaa 54976345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 55874049 - 55874160
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    |||||| |||||||||| ||||  ||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||  | ||||||||| |    
T  55874049 atgttataaaaaagagggtaataagcaatatgttgaaaacacttaaatttttaataatgatgattttgtcttttaaaaataaatataaggataattatgt 55874148  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  55874149 caatgtaattaa 55874160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 6884670 - 6884561
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  6884670 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 6884571  T
Q  101 caatgtaatt 110  Q
    ||||||||||    
T  6884570 caatgtaatt 6884561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 37564269 - 37564380
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| ||||||||||||||||||   |||| ||||||||||||||| | || ||||||||| |    
T  37564269 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacagttttgtcatttaaaaataaacatgaggataattatgt 37564368  T
Q  101 caatgtaattaa 112  Q
    |||| |||||||    
T  37564369 caatctaattaa 37564380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 22443348 - 22443262
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||||| || ||||||||| |||| ||||||||    
T  22443348 gcaatatattgaaaacactaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 22443262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 29119383 - 29119470
Alignment:
Q  27 caatatgttgaaaacatt--aaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    |||||| ||||||||| |  ||||||||||||||||||||||| ||||||||||||||||| || ||||||||| | |||||||||||    
T  29119383 caatatattgaaaacacttaaaatttttaataaggatgattttgtcatttaaaaataaatatgaggataattatgtgaatgtaattaa 29119470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 29191501 - 29191612
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || ||||||||| |    
T  29191501 atgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgatgataattatgt 29191600  T
Q  101 caatgtaattaa 112  Q
    |||||| |||||    
T  29191601 caatgtgattaa 29191612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 49283705 - 49283618
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||| ||||||||| ||||||||  |||||||||||||||| || ||||||||| |||||||||||||    
T  49283705 gcaatatattgaaaacacttaaatatttaataagaatgattttgacatttaaaaataaatatgaggataattatgtcaatgtaattaa 49283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 1921716 - 1921803
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||  | ||||||||||||||| || ||||||||| |||| ||||||||    
T  1921716 gcaatatattgaaaacacttaaatttttaataaggacgatttcgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 1921803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 38024163 - 38024052
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||| | | ||||   ||||| |||||||||| |||||||||||||||| | | |||| ||||||||||||||| | || ||||||||| |    
T  38024163 atgttacaaaaaatatggtaataaacaatacgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgaggataattatgt 38024064  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  38024063 caatgtaattaa 38024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 42739180 - 42739094
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| |||||||||   ||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  42739180 gcaatatattgaaaacacctaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 42739094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 8067423 - 8067492
Alignment:
Q  43 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||||||||||||  ||||| ||||||||| ||||||| || ||||||||| || || |||||||    
T  8067423 ttaaatttttaataaggacaattttgtcatttaaacataaatatgaggataattatgtctatataattaa 8067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 47498136 - 47498205
Alignment:
Q  43 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    |||||||||||||||||| || |||   |||| |||||||||| || ||||||||| ||||| |||||||    
T  47498136 ttaaatttttaataaggacgacttttctattttaaaataaatatgaggataattatgtcaatataattaa 47498205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 42027554 - 42027443
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| ||||||  |||||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||| ||| |||||||| |    
T  42027554 atgttacaaaaaagatgataataagcaatatgttgaaagcacttaaatttttaataatgacgattttgtcatttaaaaataaatatgaaaataattatgt 42027455  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  42027454 caatgtaattaa 42027443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 29008260 - 29008149
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||| | || ||||||||| |    
T  29008260 atgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttatcatttaaaaataaacatgaggataattatgt 29008161  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  29008160 caatgtaattaa 29008149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 12313463 - 12313377
Alignment:
Q  27 caatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||  || ||||||||| ||||| |||||||    
T  12313463 caatatattgaaaacacttaaatttttaataaggatgattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaa 12313377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 44118661 - 44118574
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||| |  ||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  44118661 gcaatatattgaaaacacttaaatttttaataagaacaattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 44118574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 33119210 - 33119296
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||   ||||||||||||||||||  ||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  33119210 gcaatatattgaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 33119296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 1828489 - 1828558
Alignment:
Q  43 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||| |||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  1828489 ttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 1828558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 47646009 - 47646058
Alignment:
Q  28 aatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaa 76  Q
    ||||| ||||||||| |||||||||||||||||| |||||| ||||||||    
T  47646009 aatatattgaaaacacttaaatttttaataaggacgattttgtcatttaa 47646058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 20219529 - 20219640
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||||| ||||  ||| |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| |    
T  20219529 atgttacaaaaaagagggtaataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataattatgt 20219628  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  20219629 caatgtaattaa 20219640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 22113554 - 22113665
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||||| ||||  ||| |||||||||| || |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| |    
T  22113554 atgttacaaaaaagagggtaataagcagtatgttgaaagcacttaaatttttaataaggacgattttgtcatttaaaaataaatatgaggataattatgt 22113653  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  22113654 caatgtaattaa 22113665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 11455693 - 11455780
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| |||| |||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  11455693 gcaatatattgacaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 11455780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 44565560 - 44565671
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||| | ||||||  ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | || ||||||||| |    
T  44565560 atgttacaaaaaaaatgataataagcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgaggataattatat 44565659  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  44565660 caatgtaattaa 44565671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 42887160 - 42887271
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  42887160 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 42887259  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  42887260 caatgtaattaa 42887271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 17307174 - 17307066
Alignment:
Q  5 ttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaa 103  Q
    |||||||||||||| |||   |||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||  || ||||||||| ||||    
T  17307174 ttacaaaaaagagggtaacaagcaatatgctgaaaacacttaaatttttaataaggacgattttattatttaaaaataaatttgaggataattatgtcaa 17307075  T
Q  104 tgtaattaa 112  Q
    |||||||||    
T  17307074 tgtaattaa 17307066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 261309 - 261198
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||  ||||||||||||||| | || ||||||||| |    
T  261309 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggtttagtcatttaaaaataaacatgaggataattatgt 261210  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  261209 caatgtaattaa 261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 2326412 - 2326301
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || ||||||||| |    
T  2326412 atgttacaaaaaagatggtaataagtaatatgttgaaaacacttaaatttttaataaggacggatttgtcatttaaaaataaacatgaggataattatgt 2326313  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  2326312 caatgtaattaa 2326301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 46833700 - 46833811
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    |||||||||||||||   ||||  ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||| | || ||||||| | |    
T  46833700 atgttacaaaaaagattgtaataagcaatatgttgaaaacacttaaatttttaataaggacaattttgtcatttaaaaataaacatgaggataattgtgt 46833799  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  46833800 caatgtaattaa 46833811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 15545037 - 15545124
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||||||||||| |||||||||||||||||  | |||| ||||||||||||||| | || ||||||||| |||||||||||||    
T  15545037 gcaatatgttgaaaacacttaaatttttaataaggtcggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaattaa 15545124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 21373527 - 21373441
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||   ||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  21373527 gcaatatattgaaacacttaaatttttaataaggatgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 21373441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 49622476 - 49622367
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| | || ||||||  | |    
T  49622476 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataagaacggttttgtcatttaaaaataaacatgaggataat--tgt 49622379  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  49622378 caatgtaattaa 49622367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 33506239 - 33506326
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| | ||||||||||||||| || ||||||||  |||| ||||||||    
T  33506239 gcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattacgtcaacgtaattaa 33506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 51621447 - 51621337
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    |||||||| |||||| | ||||  ||||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || ||| ||||| |    
T  51621447 atgttacagaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgaggat-attatgt 51621349  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  51621348 caatgtaattaa 51621337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 37661521 - 37661435
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||   |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  37661521 gcaatatattgaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 37661435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 29743950 - 29744055
Alignment:
Q  8 caaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgt 106  Q
    ||||||||| | ||||  ||||||||||||||||| |||| |||||||||||||    ||| ||||||||||||||| | || ||||||||| |||||||    
T  29743950 caaaaaagatggtaataagcaatatgttgaaaacacttaagtttttaataaggacagatttgtcatttaaaaataaacatgaggataattatgtcaatgt 29744049  T
Q  107 aattaa 112  Q
    ||||||    
T  29744050 aattaa 29744055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 6610362 - 6610253
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| | || ||||||||| |    
T  6610362 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgaggataattatgt 6610263  T
Q  101 caatgtaatt 110  Q
    ||||||||||    
T  6610262 caatgtaatt 6610253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 40978120 - 40978206
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||| ||||||||    
T  40978120 gcaatatattgaaaacactaaatttttaataaggacgattttgttatttaaaaataaatatgaagataattatgtcaacgtaattaa 40978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 2956516 - 2956603
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  2956516 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 2956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 21594792 - 21594708
Alignment:
Q  29 atatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    |||| ||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||  |||||||| |||||||||||||    
T  21594792 atatattgaaaacacttaaattttaaataaggttgattttgtcatttaaaaataaatatgagaataattatgtcaatgtaattaa 21594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 43634169 - 43634272
Alignment:
Q  9 aaaaaagaggataatgtgcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaa 108  Q
    |||||||| | ||||  ||||||| |||||||||   ||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |||||||||    
T  43634169 aaaaaagatggtaataagcaatatattgaaaacacctaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgtcaatgtaa 43634268  T
Q  109 ttaa 112  Q
    ||||    
T  43634269 ttaa 43634272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 36557617 - 36557704
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| || |||||| |||||||||||||||| | |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  36557617 gcaatatattaaaaacacttaaatttttaataagaacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 36557704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 43048459 - 43048545
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||   ||||||||||||||||||  ||||| |||||||||||| |||| ||  |||||||| ||||| |||||||    
T  43048459 gcaatatattgaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatatgagaataattatgtcaatataattaa 43048545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 27424116 - 27424047
Alignment:
Q  43 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||| ||||||||||||||||  |||| ||||||||||  ||||||| ||| ||||| |||||||    
T  27424116 ttaaattttcaataaggatgattttagtattttaaaataaatataaagataaatatgtcaatataattaa 27424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 113 - 224
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  113 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 212  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  213 caatgtaattaa 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 35384667 - 35384778
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  35384667 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacaggaggataattatgt 35384766  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  35384767 caatgtaattaa 35384778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 16617993 - 16617882
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  16617993 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 16617894  T
Q  101 caatgtaattaa 112  Q
    |||| |||||||    
T  16617893 caatataattaa 16617882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 30404354 - 30404243
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    |||||||||||||||   ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | || ||||||||| |    
T  30404354 atgttacaaaaaagatagtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgaggataattatgt 30404255  T
Q  101 caatgtaattaa 112  Q
     |||||||||||    
T  30404254 taatgtaattaa 30404243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 18672975 - 18672894
Alignment:
Q  32 tgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||||| | || ||||||||| ||||| |||||||    
T  18672975 tgttgaaaacacttaaatttttaataaggacggttttatcatttaaaaataaacatgaggataattatgtcaatataattaa 18672894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 10329322 - 10329235
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||| ||||| |||| || ||||||||| ||||| |||||||    
T  10329322 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcattttaaaatgaatatgaggataattatgtcaatataattaa 10329235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 2956109 - 2956195
Alignment:
Q  26 gcaatatgttgaaaacattaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||   |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  2956109 gcaatatattgaaacacttaaatttttaataaggacgattttttcatttaaaaatgaatatgaggataattatgtcaatataattaa 2956195  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 37276511 - 37276598
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| || ||||||||| ||||| |||||| ||||||| |||||||||  | ||||||||| |||||||||||||    
T  37276511 gcaatatattgaaaacacttcaatttttaacaaggaagattttgtcatttataaataaatataaggataattatgtcaatgtaattaa 37276598  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 1751895 - 1751964
Alignment:
Q  43 ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||||| |||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  1751895 ttaaattttaaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 1751964  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 7758825 - 7758715
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | || ||||||||| |    
T  7758825 atgttacaaaaaagatggtaata-gcaatatgttgaaaacacttaaatttttaataaggatggttttgtcatttaaaaataaacatgaggataattatgt 7758727  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  7758726 caatgtaattaa 7758715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 35734175 - 35734064
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||| ||||||||| | |||||||||||| |    
T  35734175 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcattaaaaaataaacatgaagataattatgt 35734076  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  35734075 caatgtaattaa 35734064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 28809217 - 28809328
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||| | |  ||||||||| |    
T  28809217 atgttacaaaaaagatggtaataagcaatatgttgaaaacacttaaatttttaataaggacggttttgtcatttaaaaataaacatgtggataattatgt 28809316  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  28809317 caatgtaattaa 28809328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 10356162 - 10356273
Alignment:
Q  2 atgttacaaaaaagaggataatgtgcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatct 100  Q
    ||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||| | || ||||||||| |    
T  10356162 atgttacaaaaaagatggtaataagaaatatgttgaaaacacttaaatttttaataaggacggatttttcatttaaaaataaacatgaggataattatgt 10356261  T
Q  101 caatgtaattaa 112  Q
    ||||||||||||    
T  10356262 caatgtaattaa 10356273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 34209966 - 34209879
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| | ||||||||||||||| || ||||||||| |||| ||||||||    
T  34209966 gcaatatattgaaaacacttaaatttttaataaggacgattttgttatttaaaaataaatatgaggataattatgtcaacgtaattaa 34209879  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 43589429 - 43589342
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||  |||| || ||||||||| ||||| |||||||    
T  43589429 gcaatatattgaaaacacttaaatttttaataaggacgattttgtcatttaaaaaggaatatgaggataattatgtcaatataattaa 43589342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 16256724 - 16256811
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| ||||||||||||||||||  ||||| |||||||||||| |||  || ||||||||| ||||| |||||||    
T  16256724 gcaatatattgaaaacacttaaatttttaataaggacaattttgtcatttaaaaatgaatgtgaggataattatgtcaatataattaa 16256811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 16255910 - 16255992
Alignment:
Q  31 atgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    |||||||||||| |||||||||||||||||| | |||| | ||||||||||||| | || |||| |||| |||||||||||||    
T  16255910 atgttgaaaacacttaaatttttaataaggacggttttgttatttaaaaataaacatgaggatacttatgtcaatgtaattaa 16255992  T

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Target: scaffold1251 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 117 - 204
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| || |||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  117 gcaatatattaaaaacacttaaatttttaataaggacgattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 46485071 - 46484985
Alignment:
Q  26 gcaatatgttgaaaaca-ttaaatttttaataaggatgattttatcatttaaaaataaatacgaagataattatctcaatgtaattaa 112  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| ||||| |||||||    
T  46485071 gcaatatattgaaaacacttaaatttttaataagga-gattttgtcatttaaaaatgaatatgaggataattatgtcaatataattaa 46484985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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