View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10767_low_6 (Length: 412)

Name: NF10767_low_6
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10767_low_6
NF10767_low_6
[»] chr4 (2 HSPs)
chr4 (15-407)||(31151516-31151908)
chr4 (221-273)||(29011514-29011566)
[»] chr7 (1 HSPs)
chr7 (159-283)||(29428856-29428980)
[»] chr8 (2 HSPs)
chr8 (159-283)||(20989654-20989778)
chr8 (222-264)||(38679751-38679793)
[»] chr6 (1 HSPs)
chr6 (217-283)||(19694618-19694684)
[»] chr3 (4 HSPs)
chr3 (221-319)||(17575753-17575851)
chr3 (217-274)||(11414563-11414620)
chr3 (221-265)||(40026108-40026152)
chr3 (222-283)||(35231873-35231934)
[»] chr1 (3 HSPs)
chr1 (220-283)||(23473767-23473830)
chr1 (209-292)||(50109050-50109133)
chr1 (222-283)||(35306817-35306878)
[»] scaffold0011 (1 HSPs)
scaffold0011 (165-283)||(9278-9396)
[»] chr5 (2 HSPs)
chr5 (226-283)||(15021740-15021797)
chr5 (221-321)||(32233012-32233112)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 31151516 - 31151908
Alignment:
Q  15 acaaatatcaatataccccactcacccaattaaatacaaaaatacatcattttcactctcacacaagttgcaggttcaatgaatgaatacgtgtaaaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151516 acaaatatcaatataccccactcacccaattaaatacaaaaatacatcattttcactctcacacaagttgcaggttcaatgaatgaatacgtgtaaaata 31151615  T
Q  115 cttttggaattattagcctgggctgtttcaaaatctgttctgctaggcattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151616 cttttggaattattagcctgggctgtttcaaaatctgttctgctaggcattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatga 31151715  T
Q  215 agttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaatttttta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31151716 agttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaatccattccgtccgatattacacattccatcaatttttta 31151815  T
Q  315 ttccctcaatgcggggtgtatcggaatagagtctcataattacataattgctactttacctctattctcttttttcatcgaacctttgcttct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  31151816 ttccctcaatgcggggtgtatcggaatagagtctcataattacataattgctactttacctctattctcttttttcatcgaaccattgattct 31151908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 29011514 - 29011566
Alignment:
Q  221 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgg 273  Q
    |||||||||||| |||||  ||||||||||| |||||| ||||||||| ||||    
T  29011514 attccattgtttgaattttaaaaaaatgaatggaatgggatggaacatgatgg 29011566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 29428856 - 29428980
Alignment:
Q  159 aggcattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatgg 258  Q
    |||| ||||||| |||| ||||| ||||| |||| | ||| | |||||||||||| |||||  |||||||||||  ||||||||||||||||| ||||||    
T  29428856 aggctttgtttggattggtggaacatgatggaataggatggaatgaagtggtatggagttatgttccattgtttggatttgtaaaaaatgaatggaatgg 29428955  T
Q  259 aatggaacataatggaattcattcc 283  Q
    |||| ||||| ||||||| ||||||    
T  29428956 aatgaaacatgatggaatccattcc 29428980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 20989654 - 20989778
Alignment:
Q  159 aggcattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatgg 258  Q
    |||| ||||||| |||| ||||||||||| |||| ||||| | ||| |||| ||   ||||  ||||||||||||  ||| |||||||||||| ||||||    
T  20989654 aggctttgtttggattgatggaatatgatggaatagaatggaatgaggtggaatattgttatgttccattgtttaggtttataaaaaatgaatggaatgg 20989753  T
Q  259 aatggaacataatggaattcattcc 283  Q
    |||||||||  ||||||| ||||||    
T  20989754 aatggaacaagatggaatccattcc 20989778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 38679751 - 38679793
Alignment:
Q  222 ttccattgtttaaatttgtaaaaaatgaatagaatggaatgga 264  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  38679751 ttccattgtttggttttgtaaaaaatgaatagaatggaatgga 38679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 19694684 - 19694618
Alignment:
Q  217 ttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 283  Q
    ||||||||||||||||  ||||| ||||||| ||| ||| |||||||||||||||||||| ||||||    
T  19694684 ttaaattccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattcc 19694618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 17575753 - 17575851
Alignment:
Q  221 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccc 319  Q
    |||| ||||||| |||||||||||||| ||||   || ||||||||||||||||||||||||| ||  |||| || || ||| ||||||||| ||||||    
T  17575753 attctattgtttgaatttgtaaaaaatcaataatgtgaaatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccc 17575851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 11414563 - 11414620
Alignment:
Q  217 ttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgga 274  Q
    |||||||| |||||||  ||||||||| | ||||||||||||||||||||||||||||    
T  11414563 ttaaattctattgtttggatttgtaaatagtgaatagaatggaatggaacataatgga 11414620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 40026152 - 40026108
Alignment:
Q  221 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaa 265  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  40026152 attccattgtttgattttgtaaaaaatgaatagaatggaatggaa 40026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 35231934 - 35231873
Alignment:
Q  222 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 283  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35231934 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35231873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 23473767 - 23473830
Alignment:
Q  220 aattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 283  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||||| ||||||| ||||||    
T  23473767 aattccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattcc 23473830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 50109133 - 50109050
Alignment:
Q  209 gtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatat 292  Q
    ||||| |||||  |||||||||||  |||||||| |||||||| || ||||||||||||| ||||||| |||||| ||| ||||    
T  50109133 gtatggagttatgttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcccatat 50109050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 35306878 - 35306817
Alignment:
Q  222 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 283  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35306878 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35306817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 9396 - 9278
Alignment:
Q  165 tgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatgga 264  Q
    |||||| |||| |||||| |||| |||||||||| | || ||||| ||| | | | |||||||||||| |||||||||||  | ||| || |||||| ||    
T  9396 tgtttggattgatggaatgtgatggaatggaatggaatggagtgggatggaatcatattccattgtttgaatttgtaaaattttaatggagtggaattga 9297  T
Q  265 acataatggaattcattcc 283  Q
    | || ||||||| ||||||    
T  9296 atatgatggaatccattcc 9278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 15021740 - 15021797
Alignment:
Q  226 attgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 283  Q
    |||||||  |||||| ||||||||||  ||||| |||||||| |||||||||||||||    
T  15021740 attgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaattcattcc 15021797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 32233012 - 32233112
Alignment:
Q  221 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccct 320  Q
    ||||||||||||  ||||| ||||| ||||| || |||||||||| | ||||||| ||||||| ||| |||  || ||  || ||||||||| |||||||    
T  32233012 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 32233111  T
Q  321 c 321  Q
    |    
T  32233112 c 32233112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University