View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10767_low_7 (Length: 404)
Name: NF10767_low_7
Description: NF10767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10767_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 54793985 - 54793601
Alignment:
| Q |
7 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793985 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
54793886 |
T |
|
| Q |
107 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793885 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
54793786 |
T |
|
| Q |
207 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793785 |
ctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
54793686 |
T |
|
| Q |
307 |
atggccttcatccaagcatcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattc |
391 |
Q |
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||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793685 |
atggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattc |
54793601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 52286666 - 52286282
Alignment:
| Q |
7 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52286666 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttctcatcttc |
52286567 |
T |
|
| Q |
107 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
206 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
52286566 |
ctcattcatgactgactgtgtcaatataatagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacacagagcatgt |
52286467 |
T |
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| Q |
207 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
306 |
Q |
| |
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|||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
52286466 |
ctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgccaaaaagagcaaagctcc |
52286367 |
T |
|
| Q |
307 |
atggccttcatccaagcatcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattc |
391 |
Q |
| |
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||||||||||||| ||| ||||||| |||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||| |
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| T |
52286366 |
atggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgatcaaggtctcccattc |
52286282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 54775654 - 54775932
Alignment:
| Q |
7 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54775654 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttctcatcttc |
54775753 |
T |
|
| Q |
107 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775754 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
54775853 |
T |
|
| Q |
207 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcc |
285 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54775854 |
ctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacatgctcc |
54775932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 801829 - 801450
Alignment:
| Q |
7 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
106 |
Q |
| |
|
||||||| ||||| || || |||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| || |||||||||||| |
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| T |
801829 |
cacttgggttgtactcgttaacttcttttaaggctgttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttctcatcttc |
801730 |
T |
|
| Q |
107 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
206 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| ||||| || |||| ||| ||||||||||||||||| |
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| T |
801729 |
ctcatctataactgactgtgtcaatacaacaatattaccgtgttaattattacactatttctctattgaggcttagccactccaaaaacacagagcatgg |
801630 |
T |
|
| Q |
207 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
306 |
Q |
| |
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||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| | |||||||||||| |
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| T |
801629 |
ctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcacattttcctgccataaagagcaaagctca |
801530 |
T |
|
| Q |
307 |
atggccttcatccaagcatcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccat |
389 |
Q |
| |
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| |||||| |||| || |||| | |||| |||||||||||||||| | | |||||||||||||| |||||||||||||| |
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| T |
801529 |
acggcctttatcc---cagcttcatcagaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaaggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 54775950 - 54775980
Alignment:
| Q |
361 |
acaaaaaccttctcatcaaggtctcccattc |
391 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattc |
54775980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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