View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10768_3 (Length: 614)
Name: NF10768_3
Description: NF10768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10768_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 7375862 - 7375239
Alignment:
| Q |
17 |
gttactttgctgttggctgaattttatgatccatcacttgtcaagagagtttggaagccactttcattgaagttagttacattgatcacaataaacacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7375862 |
gttactttgctgttggctgaattttatgatccatcacttgtcaagagaatttggaagccactttctttgaagttagttacattgatcacaataaacacat |
7375763 |
T |
|
| Q |
117 |
gattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcct |
213 |
Q |
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|||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7375762 |
gattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcct |
7375663 |
T |
|
| Q |
214 |
cctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
7375662 |
cctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctca |
7375563 |
T |
|
| Q |
314 |
ttcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct------ |
407 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375562 |
ttcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataac |
7375463 |
T |
|
| Q |
408 |
ccttaacctcctcaaatccattt---------------tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctc |
492 |
Q |
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|| ||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
7375462 |
aattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctc |
7375363 |
T |
|
| Q |
493 |
ttccttctctgct-cctccatcttcttcacatcctcattgctcgcc-cattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
590 |
Q |
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|||||||||| || |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375362 |
ttccttctcttctacctccatcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
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| Q |
591 |
ctatcttcttcctccatctcctcc |
614 |
Q |
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|||||||||||||||||||||||| |
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| T |
7375262 |
ctatcttcttcctccatctcctcc |
7375239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 71 - 614
Target Start/End: Original strand, 7278029 - 7278600
Alignment:
| Q |
71 |
aagccactttcattgaagttagttacattgat--cacaataaacacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaa |
165 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
7278029 |
aagccactttcattgaagttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaa |
7278128 |
T |
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| Q |
166 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7278129 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagc |
7278228 |
T |
|
| Q |
266 |
tgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctcca |
365 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
7278229 |
tgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctcca |
7278328 |
T |
|
| Q |
366 |
tcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatc |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
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| T |
7278329 |
tcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatc |
7278428 |
T |
|
| Q |
445 |
cacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctctgct-cctccatcttcttcacatcctcattgctcgcc-cattc |
542 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || ||||| |
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| T |
7278429 |
tacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgttctcctcattc |
7278528 |
T |
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| Q |
543 |
cccaaagcttcaaatttttcacctccctcattctcctccttacaccccctatcttcttcctccatctcctcc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278529 |
cccaaagcttcaaatttttcacctccctcattctcctccttacaccccctatcttcttcctccatctcctcc |
7278600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 607
Target Start/End: Original strand, 7278726 - 7278776
Alignment:
| Q |
557 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
607 |
Q |
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|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7278726 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
7278776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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