View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_1 (Length: 1076)
Name: NF10769_1
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 491 - 1076
Target Start/End: Complemental strand, 31884108 - 31883524
Alignment:
| Q |
491 |
cttcaaaagtgagtgtataagtgtttcgaatacccctccaaaatctttgatactctctaacaaaagaatgtttggatggacaaaggagtcatccatccag |
590 |
Q |
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| T |
31884108 |
cttcaaaagtgattgtataagtgtttcgaatacccctccaaaatcttttatactctctaacaaaagaatgtttggatggacaagggagtcatccatccag |
31884009 |
T |
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| Q |
591 |
tccaaccatccacaaaacaatatggtggtctcaatggttgacaacaaagaatatcaacctcaatccaacaatccacggacaaaataacaatcaaacgatc |
690 |
Q |
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| T |
31884008 |
tccaaccatccacaaaacaatatggtggtctcaacggttgacaacaaagaatatcaacctcaatccaacactccacaaacaatataacaatcaaacgatc |
31883909 |
T |
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| Q |
691 |
aagttgaaaaagactcgttcaatccaacggttcttcaagagatccaacaaaaccccaagcatcatgatcaatccaattgcgacgaatcttcctcagtact |
790 |
Q |
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| T |
31883908 |
aagttgaaaaagactcgttcaatccaacggttcttcaagagatctaacaaaaccccaagcatcatgatcaatccaattgcgacgaatcttcctcagtacc |
31883809 |
T |
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| Q |
791 |
aacacaggaaagcactcgaaaagtctaggccatcaagtgcaaagaagtagccctaacacgtggtggaaggggatcaaaggtcatgttcactcaatctctt |
890 |
Q |
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| T |
31883808 |
aacacaagaaagcactag-aaagtctaggccatcaagtgcaaagaagtagccctaacacgtggtggaaggggatcaaaggtcatgttcactcaatctctt |
31883710 |
T |
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| Q |
891 |
cctcgtaataaggatcaaatacatcttaaatgagggatgtgacaaataatcatagtctcatcttacacagttcacacttcaacaccttgcgagcgaaaca |
990 |
Q |
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| T |
31883709 |
cctcgtagtaaggatcaaatacatcttaaatgagggatgtgacaaataatcatagtctcatcttacacagctcacacttcaacaccttgcgagcgaaaca |
31883610 |
T |
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| Q |
991 |
ttgcactagcaaaatatttcttgcaaagaacataaaaacaggaaaattcattgacatgatacacatcctcggcacatatacctttg |
1076 |
Q |
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| T |
31883609 |
ttgcactagcaaaatatttcttgcaaagaacataaaaacaaggaaattcattgacatgatacacatcctcggcacatatacctttg |
31883524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 9069592 - 9069523
Alignment:
| Q |
408 |
tggagtatttatgaatagtaaata--cggtgttgtatttgtgtgaacaaatttgtgtccatttatcattt |
475 |
Q |
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| T |
9069592 |
tggagtatttatgaacagtacatatacggagttgtatttgtgtcaacaaatttgtgtttgtttatcattt |
9069523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 47692638 - 47692721
Alignment:
| Q |
1 |
tccaccacaccctttgtcctaaccaccaccaccgcccttgtcagacacaatcacctccgtcctcaccactacaccctccatcct |
84 |
Q |
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| T |
47692638 |
tccaccacaccctttgttctaaccaccaccaccgtcctcgtcagacacaatcacctccgtcctcaccactacaccctccatcct |
47692721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 14245268 - 14245327
Alignment:
| Q |
429 |
atacggtgttgtatttgtgtgaacaaatttgtgtccatttatcatttctctaaaataaaa |
488 |
Q |
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| T |
14245268 |
atacggtgttgtatttgtgtcaagagatttgtgtccagttatcaatactctaaattaaaa |
14245327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 812 - 846
Target Start/End: Complemental strand, 23972143 - 23972109
Alignment:
| Q |
812 |
agtctaggccatcaagtgcaaagaagtagccctaa |
846 |
Q |
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| T |
23972143 |
agtctaggccatcaagtgcaatgaagtagccctaa |
23972109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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