View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10769_10 (Length: 358)
Name: NF10769_10
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 1784689 - 1785038
Alignment:
| Q |
1 |
aagaagtaatagaatcatttttaactaattacctgttaaacacataaacatttatttgttacgcatatcggcattccaggtaaaatacatcgattacttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1784689 |
aagaagtaatagaatcatttttaactaattacctgctaaacacataaacatttatttgttacgcatatcggcattccaggtaaaatacatcgattacttg |
1784788 |
T |
|
| Q |
101 |
cacaatcaagggcagaattacaagtaatatctataaaattaaataatgttattagaagatgattaaaataatttacacggtaaaaaatatattttaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1784789 |
cacaatcaagggcagaattacaagtaatatctataaaattaaataatgttattagaagatgattaaaataatttacacggtaaaaaatatattttaaaat |
1784888 |
T |
|
| Q |
201 |
gatgagaaaatttacttactataggcatcggttacaacaagaaatatagtgnnnnnnnggatcacaatataaataaactcaagaattatagccattgttt |
300 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| ||| || || ||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1784889 |
gatgagagatttggcttactataggcatcggttacaaggagacatggagaaaaaaagaggaccacaatataaataaactcaagaattatagccatt-ttt |
1784987 |
T |
|
| Q |
301 |
tcatttgcttgtagtaaacagaaaattgtattatcaatttatataatatgt |
351 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1784988 |
tcatttgcatgtagtaagtagaaaattgtattatcaatttatataatatgt |
1785038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University