View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_11 (Length: 308)
Name: NF10769_11
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_11 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5734601 - 5734889
Alignment:
| Q |
1 |
gctttgaataataaataggtgcaacaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaagattgttgtttgcatagtg |
100 |
Q |
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| T |
5734601 |
gctttgaataataaataggtgcagcaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaagattgttgtttgcatggtg |
5734700 |
T |
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| Q |
101 |
ttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaataatcatgattgtgaattctctgtcaaaaggcttaccg |
200 |
Q |
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| T |
5734701 |
ttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaataatcatgattgtgaattctc---caaaagacttaccg |
5734797 |
T |
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| Q |
201 |
gttgctgaagtccgagtccaacatccctttgaattatttcatgttgaataaaattgttctattgagaagaagaatccgaagaatgttgatga |
292 |
Q |
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| T |
5734798 |
gttgctgaagtccgagtccaacatccctttgaattatttcatgttgaataaaattgttctattgagaagaagaatccgaagaatgttgatga |
5734889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 12643687 - 12643982
Alignment:
| Q |
1 |
gctttgaataataaataggtgcaacaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaagattgttgtttgcatagtg |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12643687 |
gctttaaataataaataggtgcagcaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaagattgttgtttgcatagtg |
12643786 |
T |
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| Q |
101 |
ttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaataatcatgattgtgaattctctgtcaaa-aggcttacc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
12643787 |
ttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaaaaatcatgattgtgaattctctgtcaaagaggcttacc |
12643886 |
T |
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| Q |
200 |
ggttgctgaagtccgagtccaacatccctttgaattatttcatgttgaataaaattgttctattgagaagaaga---atccgaagaatgttgatga |
292 |
Q |
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| T |
12643887 |
tgttgctgaagtccgagtccaacgtccctttgaattattttatgttgaataaaattgttctattgagaagaagaagcatccgaagaatgttgatga |
12643982 |
T |
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