View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_12 (Length: 306)
Name: NF10769_12
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5697036 - 5697235
Alignment:
| Q |
1 |
gaacaaaagttttgaagttcaaagagctggtggtgttggaattatccttgggaacaataaaactcatgcaaatgatgtaccttctgatccttatttcatt |
100 |
Q |
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| T |
5697036 |
gaacaaaagttttgaagttcaaagagctggtggtgttggaattatccttgggaacaataaaactcatgcaaatgatgtaccttctgatccttatttcatt |
5697135 |
T |
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| Q |
101 |
cctgccactggagtgacctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgt |
200 |
Q |
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| T |
5697136 |
cctgccactggagtgacctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgt |
5697235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 5684870 - 5685065
Alignment:
| Q |
5 |
aaaagttttgaagttcaaagagctggtggtgttggaattatccttgggaacaataaaactcatgcaaatgatgtaccttctgatccttatttcattcctg |
104 |
Q |
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| T |
5684870 |
aaaagtttggaagttcaaagagctggtggtgttggtttaatacttggtaacaataaagtttatgcaaatgatgtaccttctgatccttatttcattccaa |
5684969 |
T |
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| Q |
105 |
ccactggagtgacctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgt |
200 |
Q |
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| T |
5684970 |
ctactggagtgacctatgagaataccttaaaattagttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgt |
5685065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 306
Target Start/End: Complemental strand, 47692721 - 47692691
Alignment:
| Q |
276 |
aggatggagggtgtagtggtgaggacggagg |
306 |
Q |
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| T |
47692721 |
aggatggagggtgtagtggtgaggacggagg |
47692691 |
T |
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