View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_13 (Length: 305)
Name: NF10769_13
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_13 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 64 - 279
Target Start/End: Original strand, 39670523 - 39670735
Alignment:
| Q |
64 |
aaaaggccccaccaaccatacaatgctgttccaaaaaataaggagnnnnnnnnnnnnaagcgatcgggatgattgatgaatcaccctttcgctggaaaca |
163 |
Q |
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| T |
39670523 |
aaaaggccccaccaaccatacaatgctgttccaaaaaataaggagttttttttt---aagcgatcgggatgattcatgaatcaccctttcgctggaaaca |
39670619 |
T |
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| Q |
164 |
acatttctaagtcacaaaacctctttattcatctccttttcattcctttgttttgaaattgtgattaattagatacactctctagtttgcgaggggtatt |
263 |
Q |
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| T |
39670620 |
acatttctaagtcacaaaacctctttattcatctccttttcattcctttgttttgaaattgtgattaattagatacactctctagtttgcgaggggtatt |
39670719 |
T |
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| Q |
264 |
agcaagtaaataattt |
279 |
Q |
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| T |
39670720 |
agcaagtaaataattt |
39670735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 39670475 - 39670509
Alignment:
| Q |
9 |
ccaatgcatcgcgacaggcaaattctaatggtaac |
43 |
Q |
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| T |
39670475 |
ccaatgcatcgcgacaggcaaattctaatggtaac |
39670509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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