View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10769_15 (Length: 302)
Name: NF10769_15
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_15 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 14743208 - 14743085
Alignment:
| Q |
28 |
atcatagcaaccaatgaaatgaagaacctcagatcatggattgtccacgttgttacctaatccatccttttcataacaaaatccacgtcactcatgtgtc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14743208 |
atcatagcaaccaatgaaatgaagaacctcagatcatggattgtccacgttgttacctaatccatccttttcataacaaaatccacgtcactcatgtgtc |
14743109 |
T |
|
| Q |
128 |
tttgtttattttcttcttctgtcc |
151 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14743108 |
tttgtttattttcttcttctgtcc |
14743085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 555 - 506
Alignment:
| Q |
204 |
ttcaacccacacaaatatttcctctaaagacacaccttagacatgtcttc |
253 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
555 |
ttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcttc |
506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 5071569 - 5071622
Alignment:
| Q |
200 |
ttgtttcaacccacacaaatatttcctctaaagacacaccttagacatgtcttc |
253 |
Q |
| |
|
||||||||||| | ||||||||||| || ||||||||| ||||||| ||||||| |
|
|
| T |
5071569 |
ttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc |
5071622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 8514011 - 8514063
Alignment:
| Q |
204 |
ttcaacccacacaaatatttcctctaaagacacaccttagacatgtcttctac |
256 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
8514011 |
ttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctctac |
8514063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 32477257 - 32477309
Alignment:
| Q |
204 |
ttcaacccacacaaatatttcctctaaagacacaccttagacatgtcttctac |
256 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
32477257 |
ttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctctac |
32477309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 39484674 - 39484726
Alignment:
| Q |
204 |
ttcaacccacacaaatatttcctctaaagacacaccttagacatgtcttctac |
256 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
39484674 |
ttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctctac |
39484726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University