View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10769_2 (Length: 784)

Name: NF10769_2
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10769_2
NF10769_2
[»] chr3 (20 HSPs)
chr3 (1-604)||(33972752-33973356)
chr3 (613-784)||(33972622-33972797)
chr3 (559-606)||(24085354-24085401)
chr3 (559-604)||(35696245-35696290)
chr3 (559-606)||(21367674-21367721)
chr3 (559-604)||(901931-901976)
chr3 (559-604)||(30443900-30443945)
chr3 (559-604)||(39980736-39980781)
chr3 (559-608)||(41633367-41633416)
chr3 (559-607)||(2719475-2719523)
chr3 (559-606)||(402558-402605)
chr3 (560-607)||(25185993-25186040)
chr3 (559-606)||(50600194-50600241)
chr3 (566-608)||(50946300-50946342)
chr3 (559-604)||(3845580-3845625)
chr3 (559-604)||(20880483-20880528)
chr3 (559-604)||(32582751-32582796)
chr3 (566-607)||(33883765-33883806)
chr3 (559-604)||(36631069-36631114)
chr3 (559-604)||(47132338-47132383)
[»] scaffold0147 (1 HSPs)
scaffold0147 (560-607)||(23639-23686)
[»] chr8 (17 HSPs)
chr8 (607-674)||(11795093-11795160)
chr8 (559-606)||(43504758-43504805)
chr8 (559-606)||(1930042-1930089)
chr8 (559-606)||(20672757-20672804)
chr8 (559-606)||(38602340-38602387)
chr8 (559-605)||(9956831-9956877)
chr8 (562-604)||(18133666-18133708)
chr8 (560-602)||(27754412-27754454)
chr8 (608-674)||(35220725-35220791)
chr8 (559-604)||(6864477-6864522)
chr8 (609-674)||(20672753-20672818)
chr8 (559-604)||(25930572-25930617)
chr8 (559-604)||(27028838-27028883)
chr8 (559-596)||(30657798-30657835)
chr8 (612-681)||(38874652-38874721)
chr8 (559-604)||(38874653-38874698)
chr8 (559-604)||(44236841-44236886)
[»] chr4 (11 HSPs)
chr4 (560-606)||(825506-825552)
chr4 (613-673)||(11802541-11802601)
chr4 (559-607)||(42685431-42685479)
chr4 (561-604)||(26882-26925)
chr4 (565-607)||(2592324-2592366)
chr4 (607-681)||(53673653-53673727)
chr4 (613-674)||(2996580-2996641)
chr4 (559-596)||(9760447-9760484)
chr4 (559-604)||(17822883-17822928)
chr4 (559-604)||(50662756-50662801)
chr4 (566-603)||(52315216-52315253)
[»] chr5 (17 HSPs)
chr5 (562-607)||(1465035-1465080)
chr5 (559-606)||(4014440-4014487)
chr5 (559-606)||(7674655-7674702)
chr5 (562-604)||(12857723-12857765)
chr5 (559-607)||(7319023-7319071)
chr5 (559-603)||(17560433-17560477)
chr5 (559-603)||(43300885-43300929)
chr5 (559-606)||(6587123-6587170)
chr5 (559-606)||(42582919-42582966)
chr5 (566-604)||(7706016-7706054)
chr5 (613-674)||(5284450-5284511)
chr5 (561-606)||(7984978-7985023)
chr5 (559-604)||(16457997-16458042)
chr5 (559-604)||(16937901-16937946)
chr5 (559-604)||(37954693-37954738)
chr5 (559-604)||(39105471-39105516)
chr5 (613-678)||(40205072-40205137)
[»] chr2 (28 HSPs)
chr2 (559-604)||(43279547-43279592)
chr2 (559-607)||(42621390-42621438)
chr2 (561-604)||(12464491-12464534)
chr2 (561-606)||(680512-680557)
chr2 (559-608)||(3227697-3227746)
chr2 (559-608)||(15977992-15978041)
chr2 (559-608)||(44590041-44590090)
chr2 (568-604)||(1893299-1893335)
chr2 (559-599)||(6167306-6167346)
chr2 (559-607)||(35379031-35379079)
chr2 (559-606)||(16353868-16353915)
chr2 (567-606)||(16451133-16451172)
chr2 (559-598)||(27695619-27695658)
chr2 (559-606)||(40279274-40279321)
chr2 (559-606)||(40279344-40279391)
chr2 (559-606)||(40279414-40279461)
chr2 (559-605)||(5426081-5426127)
chr2 (561-607)||(7928314-7928360)
chr2 (559-604)||(12194959-12195004)
chr2 (561-606)||(16398123-16398168)
chr2 (559-604)||(20952362-20952407)
chr2 (559-604)||(26143658-26143703)
chr2 (559-604)||(26202035-26202080)
chr2 (559-604)||(33319830-33319875)
chr2 (561-602)||(39073709-39073750)
chr2 (559-604)||(40279204-40279249)
chr2 (607-652)||(42409327-42409372)
chr2 (559-604)||(45229518-45229563)
[»] chr1 (24 HSPs)
chr1 (562-607)||(15784339-15784384)
chr1 (558-604)||(5709633-5709679)
chr1 (558-607)||(3224429-3224478)
chr1 (559-604)||(7137016-7137061)
chr1 (559-604)||(27820355-27820400)
chr1 (559-604)||(37631577-37631622)
chr1 (559-607)||(12564514-12564562)
chr1 (559-607)||(34290243-34290291)
chr1 (559-607)||(38503480-38503528)
chr1 (559-606)||(35179146-35179193)
chr1 (559-606)||(45975697-45975744)
chr1 (559-597)||(3234040-3234078)
chr1 (561-607)||(10199423-10199469)
chr1 (559-597)||(17603409-17603447)
chr1 (559-604)||(1509758-1509803)
chr1 (569-606)||(10809362-10809399)
chr1 (558-607)||(14443455-14443504)
chr1 (559-604)||(24915069-24915114)
chr1 (559-604)||(28837368-28837413)
chr1 (607-668)||(35179140-35179201)
chr1 (559-604)||(39603849-39603894)
chr1 (559-604)||(41195211-41195256)
chr1 (559-604)||(49938754-49938799)
chr1 (559-604)||(51695513-51695558)
[»] chr7 (14 HSPs)
chr7 (559-605)||(47130802-47130848)
chr7 (559-608)||(9038119-9038168)
chr7 (559-604)||(9050642-9050687)
chr7 (559-608)||(25670600-25670649)
chr7 (559-604)||(46280290-46280335)
chr7 (559-607)||(7244687-7244735)
chr7 (559-607)||(19022600-19022648)
chr7 (559-606)||(20526453-20526500)
chr7 (559-606)||(33678787-33678834)
chr7 (635-678)||(45901182-45901225)
chr7 (609-658)||(7244683-7244732)
chr7 (567-608)||(28128409-28128450)
chr7 (637-674)||(44808189-44808226)
chr7 (559-604)||(45790443-45790488)
[»] chr6 (6 HSPs)
chr6 (560-606)||(835265-835311)
chr6 (607-674)||(4246411-4246478)
chr6 (567-606)||(31624957-31624996)
chr6 (602-652)||(33089502-33089552)
chr6 (558-604)||(34430479-34430525)
chr6 (565-606)||(12628355-12628396)


Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 33973356 - 33972752
Alignment:
Q  1 atctcatcatcagatcagatcgatcggttctccgaaatgggcggtaactacaatttcatttctctctaatcttcaaattcatcaataataataaatcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33973356 atctcatcatcagatcagatcgatcggttctccgaaatgggcggtaactacaatttcatttctctctaatctccaaattcatcaataataataaatcatc 33973257  T
Q  101 atcttatctcactatggtatcatcaatattattttctaaatctctattctgtgtttctgtattggaaatttcatcttcttcttcagcttcaccaactcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33973256 atcttatctcactatggtatcatcaatattattttctaaatctctattctgtgtttctgtattggaaatttcatcttcttcttcagcttcaccaactcct 33973157  T
Q  201 agcttgtggtttgcaccaaatcccagtaaaagatggggcgaactcttctttcttctctacactcctttttggctttctctttcgcttggcattgttgttc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33973156 agcttgtggtttgcaccaaatctcagtaaaagatggggcgaactcttctttcttctctacactcctttttggctttctctttctcttggcattgttgttc 33973057  T
Q  301 cttacaagctttacgaggtttttctcctttacctctaattacaaacta-nnnnnnnnnnnnaatcatgnnnnnnngttaccagaatataacactgtttta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||             |||||||       |||||||||||||||||||||||||    
T  33973056 cttacaagctttacgaggtttttctcctttacctctaattacaaactattttattttttttaatcatgtttttttgttaccagaatataacactgtttta 33972957  T
Q  400 ctttacttgacagtattttgcttaattggagtatttacttcttgtgttaatctcagcagttcctgctttcctcattcccatgctgttcgttggtaaggtn 499  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33972956 ctttacttgacagaattttactgaattggagtatttacttcttgggttaatctcagcagttcctgctttcctcattcccatgctgttcgttggtaaggta 33972857  T
Q  500 nnnnnnnnnnnnnnnngcttatttgtagcttataccgataagcgcttatgtatgccttgtgtttttataagctattttggagaacttgtgaaaataagct 599  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972856 aaaaaacaaaaacaaagcttatttgtagcttataccgataagcgcttatgtatgccttgtgtttttataagctattttggagaacttgtgaaaataagct 33972757  T
Q  600 gaaaa 604  Q
    |||||    
T  33972756 gaaaa 33972752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 613 - 784
Target Start/End: Complemental strand, 33972797 - 33972622
Alignment:
Q  613 tgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgttatatgtaagttgtttccacaggtgcctatgctactcc 712  Q
    |||||| ||||||| || ||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  33972797 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaaaggttatggacatgttatatgtaagttgtttccacaggtgcttatgctactag 33972698  T
Q  713 actaaactcaaataaaccaaccccggtggccnnnnnnng-----agtttgtgtgactttataccctattacatttat 784  Q
    | ||||||||||||||||||||||| |||||       |     |||||||||||||||||||||||||||||||||    
T  33972697 a-taaactcaaataaaccaaccccgatggcctttttttgcattaagtttgtgtgactttataccctattacatttat 33972622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 24085401 - 24085354
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  24085401 tgtttttgtaagctatcttggagaacttgtgaaaataagctgaaaaca 24085354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 35696245 - 35696290
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  35696245 tgtttttataagctatattggagaacttgtgaaaataagttgaaaa 35696290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 21367674 - 21367721
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  21367674 tgttttcataagctatcttggagaacttatgaaaataagctgaaaaca 21367721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 901931 - 901976
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  901931 tgtttttataagctatattggagaacttatgaaaataagttgaaaa 901976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 30443900 - 30443945
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||    
T  30443900 tgtttttataaactatattggagaacttatgaaaataagctgaaaa 30443945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 39980736 - 39980781
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  39980736 tgtttttataagctatattggagaacttatgaaaataagttgaaaa 39980781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 41633367 - 41633416
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||| || |||||||||||||| ||| |||||||||||||||||||||    
T  41633367 tgttttcatcagctattttggagagcttatgaaaataagctgaaaacaat 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 2719475 - 2719523
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||||||||||| |||||||||||||| |||||    
T  2719475 tgttttcataagctatcttggagaacttatgaaaataagctgagaacaa 2719523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 402605 - 402558
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||||||||| |||| ||| ||||||||||||| |||||||||||||    
T  402605 tgtttttataatctatcttgaagaacttgtgaaattaagctgaaaaca 402558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 607
Target Start/End: Original strand, 25185993 - 25186040
Alignment:
Q  560 gtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||||||||| ||||| | |||||||||||||| |||||||||    
T  25185993 gtttttataagctatcttggaaatcttgtgaaaataagatgaaaacaa 25186040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 50600241 - 50600194
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| || |||||| ||||||||||| |||||||||||||||||||    
T  50600241 tgttttcatcagctatattggagaacttatgaaaataagctgaaaaca 50600194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 608
Target Start/End: Complemental strand, 50946342 - 50946300
Alignment:
Q  566 ataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||| |||||||||||||||| |||||||||||||| ||||||    
T  50946342 ataaactattttggagaacttatgaaaataagctgagaacaat 50946300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 3845625 - 3845580
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||| ||| ||||||||||| |||||||||||||||||    
T  3845625 tgttttcataagttatcttggagaacttatgaaaataagctgaaaa 3845580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 20880483 - 20880528
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||| ||||||| ||||||||||| |||||||||||| ||||    
T  20880483 tgtttttaaaagctatattggagaacttatgaaaataagctcaaaa 20880528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 32582751 - 32582796
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||||||||||||||| || ||||||| ||||||    
T  32582751 tgttttcataagctattttggagaacttatggaaataagttgaaaa 32582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 33883806 - 33883765
Alignment:
Q  566 ataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||| || |||||||| ||||||||||||||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaacaa 33883765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 36631114 - 36631069
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||| |||||| ||||||||||| ||||||||||| |||||    
T  36631114 tgtttttatgagctatattggagaacttatgaaaataagcagaaaa 36631069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 47132338 - 47132383
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| |||||||| || |||||||||| ||||||    
T  47132338 tgtttttataagctatattggagaagttatgaaaataagttgaaaa 47132383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 607
Target Start/End: Original strand, 23639 - 23686
Alignment:
Q  560 gtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  23639 gtttttataagctatattggagaacttgtgaaaataagttgaaaacaa 23686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 607 - 674
Target Start/End: Original strand, 11795093 - 11795160
Alignment:
Q  607 ataaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||| ||| ||||||||||| |||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  11795093 ataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgt 11795160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 43504758 - 43504805
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||    
T  43504758 tgtttttataagctatcttggagaacttatggaaataagctgaaaaca 43504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 1930042 - 1930089
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| |||| || |||||||||||||||||||||||    
T  1930042 tgttttcataagctatcttggtgaccttgtgaaaataagctgaaaaca 1930089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 20672757 - 20672804
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||||||||||||||  |||||| ||| |||||||||||||||||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaaca 20672804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 38602340 - 38602387
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||||||||||||||  ||||||| |||||||||||||| |||||||    
T  38602340 tgtttttataagctatactggagaatttgtgaaaataagccgaaaaca 38602387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 9956877 - 9956831
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaac 605  Q
    |||||| |||| |||| ||||||||||| ||||||||||||||||||    
T  9956877 tgttttcataatctatcttggagaacttatgaaaataagctgaaaac 9956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 562 - 604
Target Start/End: Original strand, 18133666 - 18133708
Alignment:
Q  562 ttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||| |||| ||||||||||| |||||||||||||||||    
T  18133666 ttttataaactatattggagaacttatgaaaataagctgaaaa 18133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 27754412 - 27754454
Alignment:
Q  560 gtttttataagctattttggagaacttgtgaaaataagctgaa 602  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||    
T  27754412 gttttcataagctattttggagagcttatgaaaataagctgaa 27754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 674
Target Start/End: Complemental strand, 35220791 - 35220725
Alignment:
Q  608 taaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    ||||||||||||||||||| || ||| |||||||| |||||||||  |||| || |||||| |||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgggcatgt 35220725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 6864522 - 6864477
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||||||||||| |||| | ||||||||||||||    
T  6864522 tgttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 674
Target Start/End: Original strand, 20672753 - 20672818
Alignment:
Q  609 aaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||||||||| ||||||| |  ||| |||||||||||||||||| ||||| || ||||| ||||||    
T  20672753 aaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgt 20672818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 25930617 - 25930572
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||||||||||| | |||||||||||    
T  25930617 tgttttcataagctatcttggagaacttgtgatagtaagctgaaaa 25930572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 27028838 - 27028883
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||| ||| |||||||||||||||||    
T  27028838 tgttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 596
Target Start/End: Complemental strand, 30657835 - 30657798
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataa 596  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  30657835 tgtttttataagctatattggagaacttatgaaaataa 30657798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 681
Target Start/End: Original strand, 38874652 - 38874721
Alignment:
Q  612 ctgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgttatatgt 681  Q
    ||||||||||||||| || ||| || | |||||||||||||  |||| || |||||||| ||||||||||    
T  38874652 ctgttttcataagctattttggagaacatatgaaaataagctaaaaatagcttatggacgtgttatatgt 38874721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 38874653 - 38874698
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||||||||||||| | |||||||||||| ||||    
T  38874653 tgttttcataagctattttggagaacatatgaaaataagctaaaaa 38874698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 44236886 - 44236841
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||| ||| |||||||||||||||||    
T  44236886 tgttttcataagctatattggagagcttatgaaaataagctgaaaa 44236841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 606
Target Start/End: Complemental strand, 825552 - 825506
Alignment:
Q  560 gtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaaca 825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 673
Target Start/End: Original strand, 11802541 - 11802601
Alignment:
Q  613 tgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatg 673  Q
    |||||||||||||| |||||| |||||||||| ||||||| ||||| || |||||| ||||    
T  11802541 tgttttcataagctattatggagagcttatgagaataagctgaaaacagcttatggccatg 11802601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 42685431 - 42685479
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||||||||||||| |||||||||||||  |||||||    
T  42685431 tgttttcataagctattttggagaacgtgtgaaaataagccaaaaacaa 42685479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 604
Target Start/End: Complemental strand, 26925 - 26882
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  26925 tttttataagctatattggagaacttatgaaaataatctgaaaa 26882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 2592366 - 2592324
Alignment:
Q  565 tataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||||||||||||||| ||| || |||||||||||||||||    
T  2592366 tataagctattttggagagcttatggaaataagctgaaaacaa 2592324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 681
Target Start/End: Complemental strand, 53673727 - 53673653
Alignment:
Q  607 ataaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgttatatgt 681  Q
    |||||||||||||||||||| |  ||| ||||||||| |||||||| ||||| |  |||||||||| | ||||||    
T  53673727 ataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgt 53673653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 674
Target Start/End: Original strand, 2996580 - 2996641
Alignment:
Q  613 tgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||||||||||||| |  ||| |||| ||||||||||||  |||||||| ||||||||||||    
T  2996580 tgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgt 2996641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 596
Target Start/End: Original strand, 9760447 - 9760484
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataa 596  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  9760447 tgtttttataagctatattggagaacttatgaaaataa 9760484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 17822928 - 17822883
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||||||| |||||||||||| ||||    
T  17822928 tgttttcataagctatcttggagaacttatgaaaataagctaaaaa 17822883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 50662801 - 50662756
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||| |||||||||| |||||||| ||||||||||||| ||||||    
T  50662801 tgtttatataagctatattggagaaattgtgaaaataagttgaaaa 50662756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 52315253 - 52315216
Alignment:
Q  566 ataagctattttggagaacttgtgaaaataagctgaaa 603  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  52315253 ataagctattttggaaaacttatgaaaataagctgaaa 52315216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 562 - 607
Target Start/End: Complemental strand, 1465080 - 1465035
Alignment:
Q  562 ttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  1465080 ttttataagctatcttggaggacttgtgaaaataagctgaaaacaa 1465035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 4014487 - 4014440
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  4014487 tgttttcataagctatcttggagaacttatgaaaataagctgaaaaca 4014440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 7674655 - 7674702
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  7674655 tgttttcataagctatcttggagaatttgtgaaaataagctgaaaaca 7674702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 604
Target Start/End: Complemental strand, 12857765 - 12857723
Alignment:
Q  562 ttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  12857765 ttttataagctatattggagaacttatgaaaataagctgaaaa 12857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 7319071 - 7319023
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||||||||||| |||||||||||||| |||||    
T  7319071 tgttttcataagctatcttggagaacttatgaaaataagctgagaacaa 7319023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 603
Target Start/End: Complemental strand, 17560477 - 17560433
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaa 603  Q
    |||||||||||| ||| || |||||||||||||||||||||||||    
T  17560477 tgtttttataagttatcttcgagaacttgtgaaaataagctgaaa 17560433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 603
Target Start/End: Original strand, 43300885 - 43300929
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaa 603  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||    
T  43300885 tgtttttgtaagctatcttggagaacttatgaaaataagctgaaa 43300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 6587170 - 6587123
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||    
T  6587170 tgttttcataagctatagtggagaacttgtgaaaataagctgtaaaca 6587123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 42582919 - 42582966
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||||| |||||||| ||||||||||| |||||||||||| ||||||    
T  42582919 tgtttttgtaagctatattggagaacttatgaaaataagctcaaaaca 42582966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 604
Target Start/End: Complemental strand, 7706054 - 7706016
Alignment:
Q  566 ataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  7706054 ataagctatattggagaacttgtgaaaataagccgaaaa 7706016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 674
Target Start/End: Complemental strand, 5284511 - 5284450
Alignment:
Q  613 tgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||||||||| ||| | |||  ||||| |||||||||||| |||||||| ||||||||||||    
T  5284511 tgttttcataggctatcatgaagagctaatgaaaataagctgaaaaaagcttatggacatgt 5284450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 7984978 - 7985023
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||| ||||||||| |||||||| || |||||||||||||||||||    
T  7984978 ttttcataagctatcttggagaatttatgaaaataagctgaaaaca 7985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 16458042 - 16457997
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||| |||||  ||||||||||||||||||||| |||||||    
T  16458042 tgtttttatgagctaaattggagaacttgtgaaaataaactgaaaa 16457997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 16937946 - 16937901
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||| ||||| |||||||||||  ||||||||||||||||    
T  16937946 tgtttttatacgctatattggagaacttaggaaaataagctgaaaa 16937901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 37954693 - 37954738
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| ||||||||| | |||||||||| ||||||    
T  37954693 tgtttttataagctatattggagaacatatgaaaataagttgaaaa 37954738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 39105471 - 39105516
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||||||| |||||||||||| ||||    
T  39105471 tgttttcataagctatcttggagaacttatgaaaataagctaaaaa 39105516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 678
Target Start/End: Complemental strand, 40205137 - 40205072
Alignment:
Q  613 tgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgttata 678  Q
    |||||||||||||| |  ||| ||||||||  |||||||| ||||| || ||||||||||||||||    
T  40205137 tgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttata 40205072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 43279592 - 43279547
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  43279592 tgtttttataagctatattggagaacttgtgaaaataagttgaaaa 43279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 42621438 - 42621390
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  42621438 tgttttcataagttattctggagaacttgtgaaaataagctgaaaacaa 42621390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 561 - 604
Target Start/End: Complemental strand, 12464534 - 12464491
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  12464534 ttttcataagctatcttggagaacttgtgaaaataagctgaaaa 12464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 680512 - 680557
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||    
T  680512 ttttcataagctatcttgaagaacttgtgaaaataagctgaaaaca 680557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 3227746 - 3227697
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||| |||||||||||||||||  || |||||||||||||||||||||    
T  3227746 tgttttcataagctattttggagagattttgaaaataagctgaaaacaat 3227697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 15977992 - 15978041
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||| |||||||||||||||||  || |||||||||||||||||||||    
T  15977992 tgttttcataagctattttggagagattatgaaaataagctgaaaacaat 15978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 44590041 - 44590090
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||| ||||||||| ||| ||||||||||| |||||||||||||||||    
T  44590041 tgttttcataagctatcttgaagaacttgtgagaataagctgaaaacaat 44590090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 604
Target Start/End: Complemental strand, 1893335 - 1893299
Alignment:
Q  568 aagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1893335 aagctatcttggagaacttgtgaaaataagctgaaaa 1893299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 6167346 - 6167306
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagct 599  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  6167346 tgtttttataagctattttggagaacttatggaaataagct 6167306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 35379079 - 35379031
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||||||| ||| ||||||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaa 35379031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 16353868 - 16353915
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  16353868 tgtttttataagctatcttggagatcttgtgaaaataaagtgaaaaca 16353915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Original strand, 16451133 - 16451172
Alignment:
Q  567 taagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  16451133 taagctatcttggagaactcgtgaaaataagctgaaaaca 16451172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 598
Target Start/End: Complemental strand, 27695658 - 27695619
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagc 598  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  27695658 tgtttttataagctatattggggaacttgtgaaaataagc 27695619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 40279274 - 40279321
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  40279274 tgttttcataagctatattggagaacttatgaaaattagctgaaaaca 40279321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 40279344 - 40279391
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  40279344 tgttttcataagctatattggagaacttatgaaaattagctgaaaaca 40279391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 40279414 - 40279461
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||||||||| |||||||||| ||||||||    
T  40279414 tgttttcataagctatattggagaacttatgaaaataagttgaaaaca 40279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 5426081 - 5426127
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaac 605  Q
    |||||| | |||||||| ||||| |||||||||||||||||||||||    
T  5426081 tgttttcacaagctattctggaggacttgtgaaaataagctgaaaac 5426127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 7928360 - 7928314
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| | ||||| ||||||||||| ||||||||||||||||||||    
T  7928360 tttttacaggctatcttggagaacttatgaaaataagctgaaaacaa 7928314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 12194959 - 12195004
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||    
T  12194959 tgtttatataagttatattggagaacttgtgaaaataagttgaaaa 12195004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 16398123 - 16398168
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||||||    
T  16398123 ttttcataagttatgttggagaacttatgaaaataagctgaaaaca 16398168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 20952362 - 20952407
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||| |||||| ||||||||||| |||||||||| ||||||    
T  20952362 tgtttttattagctatattggagaacttatgaaaataagttgaaaa 20952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 26143703 - 26143658
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||  ||||||||||| |||||||||||||||||    
T  26143703 tgttttcataagctaacttggagaacttatgaaaataagctgaaaa 26143658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 26202035 - 26202080
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||| ||| ||||||||||| |||||||||| ||||||    
T  26202035 tgtttttataagatatattggagaacttatgaaaataagttgaaaa 26202080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 33319875 - 33319830
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| |||| |||| ||||||||||| |||||||||||||||||    
T  33319875 tgttttcataaactatcttggagaacttatgaaaataagctgaaaa 33319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 39073750 - 39073709
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaa 602  Q
    |||||||||||||| |||||||||| ||||||||||| ||||    
T  39073750 tttttataagctatattggagaactagtgaaaataagttgaa 39073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 40279204 - 40279249
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||||    
T  40279204 tgttttcataagctatgttggagaacttatgaaaattagctgaaaa 40279249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 42409372 - 42409327
Alignment:
Q  607 ataaactgttttcataagctgttatggggagcttatgaaaataagc 652  Q
    |||||||||||||||||| | || ||| ||||||||||||||||||    
T  42409372 ataaactgttttcataagttattctggagagcttatgaaaataagc 42409327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 45229518 - 45229563
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| || |||||||| |||||||||||||||||    
T  45229518 tgttttcataagctatcttcgagaacttatgaaaataagctgaaaa 45229563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 562 - 607
Target Start/End: Original strand, 15784339 - 15784384
Alignment:
Q  562 ttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||    
T  15784339 ttttataagctatcttggagaacttgtgaaaataagctaaaaacaa 15784384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 5709633 - 5709679
Alignment:
Q  558 gtgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  5709633 gtgtttttagaagctatattggagaacttgtgaaaataagttgaaaa 5709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 3224429 - 3224478
Alignment:
Q  558 gtgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||||||||||||||| | |||||||| |||||||||||||| |||||    
T  3224429 gtgtttttataagctattctagagaacttatgaaaataagctgagaacaa 3224478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 7137061 - 7137016
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||    
T  7137061 tgttttcataagctatcttggagaacttatgaaaataagctgaaaa 7137016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 27820400 - 27820355
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| |||||||| || |||||||||||||||||    
T  27820400 tgtttttataagctatcttggagaatttatgaaaataagctgaaaa 27820355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 37631622 - 37631577
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  37631622 tgtttttgtaagctatattggagaacttatgaaaataagctgaaaa 37631577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 12564562 - 12564514
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||||||||||| || |||||||||||||||||    
T  12564562 tgttttcataagctatcttggagaacttatggaaataagctgaaaacaa 12564514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 34290243 - 34290291
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||| ||||||| ||||||||||||||||||||    
T  34290243 tgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaa 34290291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 38503528 - 38503480
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||| | |||||| ||||||||||| ||||||||||||||||||||    
T  38503528 tgtttttgttagctatcttggagaacttatgaaaataagctgaaaacaa 38503480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 35179146 - 35179193
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  35179146 tgttttcataagttattatggagaacttatgaaaataagctgaaaaca 35179193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 45975697 - 45975744
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| |||||||| || |||||||||||||||||||    
T  45975697 tgttttcataagctatcttggagaatttatgaaaataagctgaaaaca 45975744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 597
Target Start/End: Complemental strand, 3234078 - 3234040
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataag 597  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  3234078 tgtttttataagctatattggagaacttatgaaaataag 3234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 10199469 - 10199423
Alignment:
Q  561 tttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||| |||||||||||| |||| ||| ||||||||||||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaaaacaa 10199423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 597
Target Start/End: Complemental strand, 17603447 - 17603409
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataag 597  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  17603447 tgtttttataagctatattggagaacttctgaaaataag 17603409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 1509758 - 1509803
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||| | |||||||||||||| ||||||| ||||||    
T  1509758 tgtttttataagctctgttggagaacttgtgtaaataagttgaaaa 1509803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 10809362 - 10809399
Alignment:
Q  569 agctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  10809362 agctatattggagaacttatgaaaataagctgaaaaca 10809399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 14443455 - 14443504
Alignment:
Q  558 gtgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    ||||||||||||||||  |||||||| || |||||||||| |||||||||    
T  14443455 gtgtttttataagctacattggagaatttatgaaaataaggtgaaaacaa 14443504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 24915114 - 24915069
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||| | |||||||||||||||||||||| ||||||    
T  24915114 tgttttcataagctgtcttggagaacttgtgaaaataagttgaaaa 24915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 28837413 - 28837368
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||||| ||||||||||| | |||||| ||||||    
T  28837413 tgtttttataagctatttaggagaacttgtaacaataagttgaaaa 28837368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 35179140 - 35179201
Alignment:
Q  607 ataaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatgg 668  Q
    |||| ||||||||||||| | |||||| || ||||||||||||||| ||||| || ||||||    
T  35179140 ataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatgg 35179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 39603894 - 39603849
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||| ||||||||||| | ||| |||||||||||||||||    
T  39603894 tgtttttatatgctattttggatagcttatgaaaataagctgaaaa 39603849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 41195256 - 41195211
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| |||| |||| ||||||||||| |||||||||||||||||    
T  41195256 tgttttcataaactatcttggagaacttatgaaaataagctgaaaa 41195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 49938754 - 49938799
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| || |||||||| |||||||||| ||||||    
T  49938754 tgtttttataagctatattagagaacttatgaaaataagttgaaaa 49938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 51695558 - 51695513
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| ||||||||| |||||||| || |||||||||||||||||    
T  51695558 tgttttcataagctatcttggagaatttatgaaaataagctgaaaa 51695513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 47130848 - 47130802
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaac 605  Q
    |||||| ||||||||| |||||||||||||||||||||| |||||||    
T  47130848 tgttttcataagctatcttggagaacttgtgaaaataagttgaaaac 47130802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 9038119 - 9038168
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||||    
T  9038119 tgttttcataaactatcatggagaacttgtgaaaataagctgaaaacaat 9038168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 9050642 - 9050687
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||    
T  9050642 tgttttcataaactatcttggagaacttgtgaaaataagctgaaaa 9050687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 25670649 - 25670600
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    |||||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  25670649 tgtttttataacatatcttggagagcttgtgaaaataagctgaaaacaat 25670600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 46280335 - 46280290
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||    
T  46280335 tgtttttataagctatattggagaacttatgaaaataggctgaaaa 46280290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 7244687 - 7244735
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||| ||||||||| ||||||| ||| ||||||||||||||||||||    
T  7244687 tgttttcataagctatattggagagcttatgaaaataagctgaaaacaa 7244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 19022648 - 19022600
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaacaa 607  Q
    |||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  19022648 tgtttttataagctatattggagaacttatgaaaataagttgaagacaa 19022600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 20526453 - 20526500
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||||||||||||||  |||||||||||| ||||||    
T  20526453 tgttttcataagctattttggagaactaatgaaaataagctaaaaaca 20526500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 33678787 - 33678834
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  33678787 tgttttcataagctatcttggaaaacttgtgaaaataagttgaaaaca 33678834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 678
Target Start/End: Original strand, 45901182 - 45901225
Alignment:
Q  635 gagcttatgaaaataagcagaaaaaaggttatggacatgttata 678  Q
    |||||||||||||||| | |||||||| ||||||||||||||||    
T  45901182 gagcttatgaaaataaactgaaaaaagcttatggacatgttata 45901225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 658
Target Start/End: Original strand, 7244683 - 7244732
Alignment:
Q  609 aaactgttttcataagctgttatggggagcttatgaaaataagcagaaaa 658  Q
    |||||||||||||||||| |  ||| |||||||||||||||||| |||||    
T  7244683 aaactgttttcataagctatattggagagcttatgaaaataagctgaaaa 7244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 28128450 - 28128409
Alignment:
Q  567 taagctattttggagaacttgtgaaaataagctgaaaacaat 608  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  28128450 taagctattttggagaatttatggaaataagctgaaaacaat 28128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 674
Target Start/End: Original strand, 44808189 - 44808226
Alignment:
Q  637 gcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  44808189 gcttatgaaaataagctgaaaacaggttatggacatgt 44808226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 45790488 - 45790443
Alignment:
Q  559 tgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||||||    
T  45790488 tgtttttataaactatattggataacttatgaaaataagctgaaaa 45790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 606
Target Start/End: Complemental strand, 835311 - 835265
Alignment:
Q  560 gtttttataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  835311 gttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 674
Target Start/End: Original strand, 4246411 - 4246478
Alignment:
Q  607 ataaactgttttcataagctgttatggggagcttatgaaaataagcagaaaaaaggttatggacatgt 674  Q
    |||| ||||||||||||||| |||||| |||| ||| ||||||||  ||||| || ||||||||||||    
T  4246411 ataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgt 4246478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Complemental strand, 31624996 - 31624957
Alignment:
Q  567 taagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  31624996 taagctatattggagaacttatgaaaataagctgaaaaca 31624957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 652
Target Start/End: Original strand, 33089502 - 33089552
Alignment:
Q  602 aaacaataaactgttttcataagctgttatggggagcttatgaaaataagc 652  Q
    |||| |||||||||||||||||||| |  |||||||| |||||||||||||    
T  33089502 aaacgataaactgttttcataagctatcttggggagcctatgaaaataagc 33089552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 34430525 - 34430479
Alignment:
Q  558 gtgtttttataagctattttggagaacttgtgaaaataagctgaaaa 604  Q
    ||||||| ||||||||| |||||||| || |||||||||||||||||    
T  34430525 gtgttttcataagctatcttggagaagttatgaaaataagctgaaaa 34430479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 12628355 - 12628396
Alignment:
Q  565 tataagctattttggagaacttgtgaaaataagctgaaaaca 606  Q
    |||||||||||||||||||||| ||||| |||| ||||||||    
T  12628355 tataagctattttggagaacttatgaaagtaagttgaaaaca 12628396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University