View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_3 (Length: 711)
Name: NF10769_3
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_3 |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 47261959 - 47262556
Alignment:
| Q |
8 |
tagcataggataggacaacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtacc |
107 |
Q |
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| T |
47261959 |
tagcataggataggacaacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtacc |
47262058 |
T |
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| Q |
108 |
aaccacataaagattaatatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagcta |
207 |
Q |
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| T |
47262059 |
aaccaaataaagattaatatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagcta |
47262158 |
T |
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| Q |
208 |
tttctagcaaccaaaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcag |
307 |
Q |
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| T |
47262159 |
tttctagcaaccaaaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcag |
47262258 |
T |
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| Q |
308 |
aatccgtataactattcgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccac |
407 |
Q |
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| T |
47262259 |
aatccgtataactattcgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccac |
47262358 |
T |
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| Q |
408 |
cgtagtattcaccacactccataacgttccatcaacgatctgatcaaacaccggcggcgtaagatgatcaacaccgttggctccaccgtagaaataagta |
507 |
Q |
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| T |
47262359 |
cgtagtattcaccacactccataacgttccatcaatgatctgatcaaacaccggcggcgtaggatgatcaacaccgttgactccaccgtagaaataagta |
47262458 |
T |
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| Q |
508 |
gtacgtatcatatattttgcaccgcgatacacaggaatattgtagcagtgttttttaacttggagagggaatgaacgaagggttttgagagttgggag |
605 |
Q |
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| T |
47262459 |
gtacgtatcatatattttgcaccgcgatacacaggaatattgtagcagtgttttttaacttggagagggaatgaacgaagggttttgagagttgggag |
47262556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 627 - 711
Target Start/End: Original strand, 47262172 - 47262256
Alignment:
| Q |
627 |
aaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtc |
711 |
Q |
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| T |
47262172 |
aaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtc |
47262256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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