View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_4 (Length: 574)
Name: NF10769_4
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_4 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 46 - 554
Target Start/End: Original strand, 28829931 - 28830439
Alignment:
| Q |
46 |
cagttatgttgcatacataggtgaaacatacatgttcataacaaagtgataataaactcatgtttggatgccttaaacttacttttagtatcgtcccttg |
145 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28829931 |
cagttatgttgcatatataggtgaaacatacatgttcataacaaagtgataataaactcatgtttggatgccttaaacttacttttagtatcgtcccttg |
28830030 |
T |
|
| Q |
146 |
gtttcttcactcttagtcgtaaatatatgcagatgaaacagagaaccaaaacaacaataacaactgggattgctatgatgatgccagttcttgatgtgtg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830031 |
gtttcttcactcttagtcgtaaatatatgcagatgaaacagagaaccaaaacaacaataacaactgggattgctatgatgatgccagttcttgatgtgtg |
28830130 |
T |
|
| Q |
246 |
ttccttttctacacaaatcagaaaattcggataagaaaagcagaaagaaaaaataattatataatatgtatttttaatataattaaattctatatctttt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830131 |
ttccttttctacacaaatcagaaaattcggataagaaaagcagaaagaaaaaataattatataatatgtatttttaatataattaaattctatatctttt |
28830230 |
T |
|
| Q |
346 |
acgtgagtttaaatggttttgactataccatatgactattttccttattagagagaattttgaataaattttcacaaagtgtttattgtttaaacttctg |
445 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830231 |
acgtgagtttaaatggttttgactataccatatgactattttccttattagagagaattttgaataaattttcacaaagtgtttattgtttaaacttctg |
28830330 |
T |
|
| Q |
446 |
ttgtaggatgacatcatgaaaacaaagtagaagaagatgaaaaagataatgattgttgcacaaataaattctaaagcatatgtaatataataaacttgaa |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28830331 |
ttgtaggatgacatcatgaaaacaaagtagaagaagatgaaaaagataatgattgttgcacaaataaattctaaagcatatgtaatataataaacttgaa |
28830430 |
T |
|
| Q |
546 |
gtttgattt |
554 |
Q |
| |
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||||||||| |
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| T |
28830431 |
gtttgattt |
28830439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 46 - 271
Target Start/End: Original strand, 28860837 - 28861065
Alignment:
| Q |
46 |
cagttatgttgcatacataggtgaaacata---catgttcataacaaagtgataataaactcatgtttggatgccttaaacttacttttagtatcgtccc |
142 |
Q |
| |
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||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||| ||||||||| | |||||| ||||||||||| || |||| |
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| T |
28860837 |
cagttatgttgcatatataggtgaaacagataccatgttcataacaaagtgataaaaaattcatgtttgtaggccttagacttacttttaatactttccc |
28860936 |
T |
|
| Q |
143 |
ttggtttcttcactcttagtcgtaaatatatgcagatgaaacagagaaccaaaacaacaataacaactgggattgctatgatgatgccagttcttgatgt |
242 |
Q |
| |
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|||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| |
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| T |
28860937 |
ttggtttcttcacttgtagtcgtagatagatgcagatgaaacagagaaccaaaacaacaataacaattgggattgctattatgatggaagttcttgatgt |
28861036 |
T |
|
| Q |
243 |
gtgttccttttctacacaaatcagaaaat |
271 |
Q |
| |
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|| | |||| |||||| ||||||||||| |
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|
| T |
28861037 |
atgattctttcctacacgaatcagaaaat |
28861065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 46 - 263
Target Start/End: Original strand, 28855645 - 28855865
Alignment:
| Q |
46 |
cagttatgttgcatacataggtgaaaca--ta-catgttcataacaaagtgataataaactcatgtttggatgccttaaacttacttttagtatcgtccc |
142 |
Q |
| |
|
||||||||||||||| |||||||||||| || | |||||||||||||||||||||||| | ||||||||| || || ||| ||||| | || | || |
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| T |
28855645 |
cagttatgttgcatatataggtgaaacaattatcgtgttcataacaaagtgataataaatttatgtttggagaccctagactcactttgattagttttcc |
28855744 |
T |
|
| Q |
143 |
ttggtttcttcactcttagtcgtaaatatatgcagatgaaacagagaaccaaaacaacaataacaactgggattgctatgatgatgccagttcttgatgt |
242 |
Q |
| |
|
||||||||||||| | |||||||| ||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||| ||||||| ||||| |
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| T |
28855745 |
ttggtttcttcacacgtagtcgtagataaatgcagatgaaacagaccaccaaaacaataataacaattgggattgctatgataatggcagttctggatgt |
28855844 |
T |
|
| Q |
243 |
gtgttccttttctacacaaat |
263 |
Q |
| |
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||| |||||| |||||||||| |
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|
| T |
28855845 |
gtgatcctttcctacacaaat |
28855865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 43449529 - 43449574
Alignment:
| Q |
288 |
gaaagaaaaaataattatataatatgtatttttaatataattaaat |
333 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
43449529 |
gaaagagaaaataattaaataatatgtatttttaaaataattaaat |
43449574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 6411036 - 6411003
Alignment:
| Q |
287 |
agaaagaaaaaataattatataatatgtattttt |
320 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
6411036 |
agaaagaaaaaataattaaataatatgtattttt |
6411003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 5536363 - 5536323
Alignment:
| Q |
291 |
agaaaaaataattatataatatgtatttttaatataattaa |
331 |
Q |
| |
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|||||||||||||| ||||||| ||||||||| |||||||| |
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| T |
5536363 |
agaaaaaataattaaataatatatatttttaaaataattaa |
5536323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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