View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_6 (Length: 447)
Name: NF10769_6
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 3 - 447
Target Start/End: Original strand, 5696789 - 5697234
Alignment:
| Q |
3 |
gatgtcgaagaaaatgctggcatactaaaaacaaattctgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaa |
102 |
Q |
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||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5696789 |
gatgttgaagaatatgcaggcatactaaaaacaaattctgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaa |
5696888 |
T |
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| Q |
103 |
ggttaatatatttattgttcnnnnnnnnnnnn-ggttaatatatttacatatatttcatgatgcagttattgccaagacaatacccttgatccaagcaag |
201 |
Q |
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| T |
5696889 |
ggttaatatatttattgttcaaaaaaaaaaaaaggttaatatatttacatatatttcatgatgcagttattgccaagacaatacccttgatccaagcaag |
5696988 |
T |
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| Q |
202 |
gtcaaggggaagatagttttgtgcatgagaggacaaggtggaagactgaacaaaagttttgaagttcaaagagctggtggtgttggaattatccttggga |
301 |
Q |
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| T |
5696989 |
gtcaaggggaagatagttttgtgcatgagaggacaaggtggaagactgaacaaaagttttgaagttcaaagagctggtggtgttggaattatccttggga |
5697088 |
T |
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| Q |
302 |
acaataaaactcatgcaaatgatgtaccttctgatccttatttcattcctgccactggagtgacctatgagaataccttaaaacttgttcaatatattca |
401 |
Q |
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| T |
5697089 |
acaataaaactcatgcaaatgatgtaccttctgatccttatttcattcctgccactggagtgacctatgagaataccttaaaacttgttcaatatattca |
5697188 |
T |
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| Q |
402 |
ttcttctcctaatccaatggcacaacttttgcctggaagaactgtg |
447 |
Q |
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| T |
5697189 |
ttcttctcctaatccaatggcacaacttttgcctggaagaactgtg |
5697234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 154 - 447
Target Start/End: Original strand, 5684771 - 5685064
Alignment:
| Q |
154 |
atttcatgatgcagttattgccaagacaatacccttgatccaagcaaggtcaaggggaagatagttttgtgcatgagaggacaaggtggaagactgaaca |
253 |
Q |
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| T |
5684771 |
atttcatgatgcagttattgcctagacaatacccttgatccaagcaaggtcaagggaaaaatagttttgtgcatgagagggcaaggtggaagagtgaaaa |
5684870 |
T |
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| Q |
254 |
aaagttttgaagttcaaagagctggtggtgttggaattatccttgggaacaataaaactcatgcaaatgatgtaccttctgatccttatttcattcctgc |
353 |
Q |
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| T |
5684871 |
aaagtttggaagttcaaagagctggtggtgttggtttaatacttggtaacaataaagtttatgcaaatgatgtaccttctgatccttatttcattccaac |
5684970 |
T |
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| Q |
354 |
cactggagtgacctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtg |
447 |
Q |
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| T |
5684971 |
tactggagtgacctatgagaataccttaaaattagttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtg |
5685064 |
T |
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