View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_7 (Length: 388)
Name: NF10769_7
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 35229945 - 35230319
Alignment:
| Q |
14 |
gaacacagcgaacccaattggcaatggtgccaaaatctactcataaaataagtcacacaaataataataagttatgattttaatttctatatagttatta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35229945 |
gaacacagcgaacccaattggcaatggtgccaaaatctactcataaaataagtcacacaaataataataagttatgattttaatttctatatagttatta |
35230044 |
T |
|
| Q |
114 |
agtgtatatgattaaagtcaaatgtttataataattcgacggttatgattgattgacaatgtnnnnnnn-cttacgggaacatgagagtctctagcgcta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
35230045 |
agtgtatatgattaaagtcaaatgtttataataattcgacggttatgattgattgacaacgtaaaaaaaacttacgggaacatgagagtctctagcgcta |
35230144 |
T |
|
| Q |
213 |
cgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcaccaagaccatcacctttggtgtaaccaggagcaacaa |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230145 |
cgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcaccaagaccatcacctttggtgtaaccaggagcaacaa |
35230244 |
T |
|
| Q |
313 |
agttggcaccacctttcagatctccaaatcttgtctttccttcaaaacctttcacaacaccagcaccacaaatag |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230245 |
agttggcaccacctttcagatctccaaatcttgtctttccttcaaaacctttcacaacaccagcaccacaaatag |
35230319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 2649439 - 2649525
Alignment:
| Q |
219 |
gcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcaccaagaccatcacctttggtgtaaccagga |
305 |
Q |
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|
| T |
2649439 |
gcatcagtggcagagaagacagtgtagacaagaacaaaagtaccaacaatctcagctccaagaccatcacccttggtgtaaccagga |
2649525 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 31459826 - 31459966
Alignment:
| Q |
185 |
tacgggaacatgagagtctctagcgctacgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcaccaagacca |
284 |
Q |
| |
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||||||||| || |||||||| |||||||| || ||||| ||||| |||||||||||||| ||||||| || || |||||||| ||||| ||||| ||| |
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| T |
31459826 |
tacgggaacgtgggagtctctggcgctacgcttggcatcagtggcggagaagacggtgtagacaagaacaaaggtaccaacaatctcagctccaagtcca |
31459925 |
T |
|
| Q |
285 |
tcacctttggtgtaaccaggagcaacaaagttggcaccacc |
325 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
31459926 |
tcacctttagtgtaaccaggggcaacaaagttagcaccacc |
31459966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 33880417 - 33880362
Alignment:
| Q |
120 |
tatgattaaagtcaaatgtttataataattcgacggttatgattgattgacaatgt |
175 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| || ||||||||||||||||||||| |
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|
| T |
33880417 |
tatgattagagtaaaatgtttttaataatttgatagttatgattgattgacaatgt |
33880362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 31459609 - 31459643
Alignment:
| Q |
18 |
acagcgaacccaattggcaatggtgccaaaatcta |
52 |
Q |
| |
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| T |
31459609 |
acagcgaacccaattggcaatggagccaaaatcta |
31459643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 387
Target Start/End: Complemental strand, 41037417 - 41037219
Alignment:
| Q |
189 |
ggaacatgagagtctctagcgctacgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcaccaagaccatcac |
288 |
Q |
| |
|
|||||||||||||||||||| | | || ||||| || || ||||| || ||||| ||||||| || || |||||||| ||||| ||||| ||||||| |
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|
| T |
41037417 |
ggaacatgagagtctctagcatttctcttggcatcagtagcagagaaaacagtgtagacaagaacaaaggtaccaacaatctcagctccaagtccatcac |
41037318 |
T |
|
| Q |
289 |
ctttggtgtaaccaggagcaacaaagttggcaccacctttcagatctccaaatcttgtctttccttcaaaacctttcacaacaccagcaccacaaatag |
387 |
Q |
| |
|
|||| ||||| |||||| ||||| || ||||||||||| | | || | || | || ||||||||||| ||||| ||||||||||||||||||| |
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| T |
41037317 |
ctttagtgtatccaggattcacaaaattagcaccacctttaaacagttcatacctagcattaccttcaaaacccttcaccacaccagcaccacaaatag |
41037219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 7952356 - 7952301
Alignment:
| Q |
120 |
tatgattaaagtcaaatgtttataataattcgacggttatgattgattgacaatgt |
175 |
Q |
| |
|
|||||| ||||| |||||||| |||| || |||||||||||||||||||||||||| |
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|
| T |
7952356 |
tatgataaaagtgaaatgtttttaatgatccgacggttatgattgattgacaatgt |
7952301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 1132203 - 1132148
Alignment:
| Q |
120 |
tatgattaaagtcaaatgtttataataattcgacggttatgattgattgacaatgt |
175 |
Q |
| |
|
|||||| |||||||||||||| |||| || |||||||||||||||||||| |||| |
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| T |
1132203 |
tatgataaaagtcaaatgtttctaatgatctgacggttatgattgattgacgatgt |
1132148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 40835126 - 40835214
Alignment:
| Q |
189 |
ggaacatgagagtctctagcgctacgtttagcatcggtggctgagaagacggtgtaaacaagaatgaaagtgccaacaatttcagcacc |
277 |
Q |
| |
|
|||||||||||||||||||| | | ||| | ||| ||||| ||||| |||||||||||||||| || || |||| ||||||||||| |
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| T |
40835126 |
ggaacatgagagtctctagcatttcttttgggatctgtggcagagaacacggtgtaaacaagaacaaaggttccaattatttcagcacc |
40835214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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