View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10769_8 (Length: 387)

Name: NF10769_8
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10769_8
NF10769_8
[»] chr3 (2 HSPs)
chr3 (95-380)||(35518483-35518768)
chr3 (11-95)||(35518134-35518218)
[»] chr6 (5 HSPs)
chr6 (95-380)||(33767328-33767608)
chr6 (13-81)||(33767814-33767882)
chr6 (13-59)||(4501475-4501521)
chr6 (13-59)||(15825027-15825073)
chr6 (13-59)||(34311021-34311067)
[»] chr7 (2 HSPs)
chr7 (13-59)||(26084131-26084177)
chr7 (13-59)||(26107918-26107964)
[»] chr5 (2 HSPs)
chr5 (13-59)||(549720-549766)
chr5 (13-59)||(30280132-30280178)
[»] scaffold1049 (1 HSPs)
scaffold1049 (13-59)||(1247-1293)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 95 - 380
Target Start/End: Original strand, 35518483 - 35518768
Alignment:
Q  95 agtggtggaagatatagtaagacaatagtttttataagggatatcacttttatcataagataaaaaggaagaaatggggtaagcagaattacatgattgg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  35518483 agtggtggaagatatagtaagacaatagtttttataagggatatcacatttatcataagataaaaaggaagaaatggagtaagcagaattacctgattgg 35518582  T
Q  195 tgtagagaaaaggttagaagactgcagtgataatcttcaagataagttggtttacttttaggtcttgtagaacgtatccgtagcatcggtgataggagga 294  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35518583 tgcagagaaaaggttagaagactgcagtgataatcttcaagataagttggtttacttttaggtcttgtagaacgtatctgtagcatcggtgataggagga 35518682  T
Q  295 tgaggaggtgcaggaggagtagaagttagaggggtaggctcagatgaagcagaagcagtagaagatggtgtaggaaaattattaac 380  Q
     |||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35518683 ggaggtgcaggaggaggagtagaagttagaggggtaggctcagatgaagcagaagcagtagaagatggtgtaggcaaattattaac 35518768  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 35518134 - 35518218
Alignment:
Q  11 gaagaaaagcattattgacgtcaagttgctcaagaaaccaacctttgatagaagccaagctgagaatagctctaacagtggtcaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  35518134 gaagaaaagcattattgacgtcaagttgctcaagaaaccaacctttgatagaagccaagctgagaagagctctaatagtggtcaa 35518218  T

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Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 95 - 380
Target Start/End: Complemental strand, 33767608 - 33767328
Alignment:
Q  95 agtggtggaagatatagtaagacaatagtttttataagggatatcacttttatcataagataaaaaggaagaaatggggtaagcagaatt-----acatg 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||     |  ||    
T  33767608 agtggtggaagatatagtaagacaatagtttttataagggatatcacatttatcatacgataaaaaggaagaaatggggtaagcggaattatctgatctg 33767509  T
Q  190 attggtgtagagaaaaggttagaagactgcagtgataatcttcaagataagttggtttacttttaggtcttgtagaacgtatccgtagcatcggtgatag 289  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||  | |||||||||||||    
T  33767508 attggtgcagagaagaggttagaagactgcagtgataatcttcaagataacttggtttagttttaggtcttgtagaacgtctcaat-gcatcggtgatag 33767410  T
Q  290 gaggatgaggaggtgcaggaggagtagaagttagaggggtaggctcagatgaagcagaagcagtagaagatggtgtaggaaaattattaac 380  Q
    |||||         | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33767409 gagga---------ggaggaggagtagaagtcagaggggtagactcagatgaagcagaagcagtagaagatggtgtaggcaaattattaac 33767328  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 33767882 - 33767814
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgatagaagccaagctgagaatagct 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  33767882 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttactagaagccaagctgagaagagct 33767814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 4501521 - 4501475
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  4501521 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 4501475  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 15825073 - 15825027
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  15825073 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 15825027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 34311067 - 34311021
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  34311067 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 34311021  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 26084131 - 26084177
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  26084131 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 26084177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 26107918 - 26107964
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  26107918 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 26107964  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 549720 - 549766
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  549720 agaaatgcattattgacatcaagttgctcaagaaaccaccctttgat 549766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30280132 - 30280178
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||    
T  30280132 agaaatgcattattgacatcaaattgctcaagaaaccaccctttgat 30280178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 1247 - 1293
Alignment:
Q  13 agaaaagcattattgacgtcaagttgctcaagaaaccaacctttgat 59  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||    
T  1247 agaaatgcattattgacatcaaattgctcaagaaaccaccctttgat 1293  T

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